miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8066 3' -60.8 NC_001973.1 + 22998 0.67 0.67838
Target:  5'- cGACgCCGAcgugcaaaaGAUCuuGGCCGACGUGg -3'
miRNA:   3'- cUUG-GGCUag-------CUGGggCCGGCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 26152 0.67 0.716646
Target:  5'- aAGCCCGcgUGGgCCaguuccGCCGGCGCGg -3'
miRNA:   3'- cUUGGGCuaGCUgGGgc----CGGCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 27844 0.73 0.35361
Target:  5'- cGGCCCGGUuggccggcgcuggCGGCCgCGGCCGcggGCGCGg -3'
miRNA:   3'- cUUGGGCUA-------------GCUGGgGCCGGC---UGCGC- -5'
8066 3' -60.8 NC_001973.1 + 29956 0.68 0.610367
Target:  5'- cGAGCCCGuacagaGACgCCGGCUcgguggugGGCGCGu -3'
miRNA:   3'- -CUUGGGCuag---CUGgGGCCGG--------CUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 32545 0.7 0.533595
Target:  5'- cGAGCUCGG-CGAUCgCCGccGCCGACGCc -3'
miRNA:   3'- -CUUGGGCUaGCUGG-GGC--CGGCUGCGc -5'
8066 3' -60.8 NC_001973.1 + 32977 0.67 0.716646
Target:  5'- gGAACagaaCGA-CGcacgccaccaccGCCUCGGCCGugGCGc -3'
miRNA:   3'- -CUUGg---GCUaGC------------UGGGGCCGGCugCGC- -5'
8066 3' -60.8 NC_001973.1 + 35156 0.66 0.735418
Target:  5'- -cGCuuGAUggCGACgCUGGCgCGACGCa -3'
miRNA:   3'- cuUGggCUA--GCUGgGGCCG-GCUGCGc -5'
8066 3' -60.8 NC_001973.1 + 36291 0.71 0.484638
Target:  5'- cGAAUgCGAgcgCGccuacaacacgggcGCCgCGGCCGACGCGg -3'
miRNA:   3'- -CUUGgGCUa--GC--------------UGGgGCCGGCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 36833 0.66 0.744686
Target:  5'- uGAACCCGccgacCGGCCUgagGGCCGACuCGg -3'
miRNA:   3'- -CUUGGGCua---GCUGGGg--CCGGCUGcGC- -5'
8066 3' -60.8 NC_001973.1 + 38819 0.7 0.533595
Target:  5'- -cGCCa-AUCGACuCCCGGCgGAgGCGg -3'
miRNA:   3'- cuUGGgcUAGCUG-GGGCCGgCUgCGC- -5'
8066 3' -60.8 NC_001973.1 + 39410 0.68 0.639562
Target:  5'- -cGCCaGGUCGGCCgCGGUgaGGCGCGu -3'
miRNA:   3'- cuUGGgCUAGCUGGgGCCGg-CUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 40831 0.75 0.266661
Target:  5'- uGACCuCcAUCGACCCUaGCCGACGCGu -3'
miRNA:   3'- cUUGG-GcUAGCUGGGGcCGGCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 40910 0.67 0.67838
Target:  5'- uGAACUCGAU-GACCCUaGCCGGCaCGu -3'
miRNA:   3'- -CUUGGGCUAgCUGGGGcCGGCUGcGC- -5'
8066 3' -60.8 NC_001973.1 + 40988 0.76 0.243455
Target:  5'- uGAACUCGAUUGACCCUuGCCaACGCGu -3'
miRNA:   3'- -CUUGGGCUAGCUGGGGcCGGcUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 41067 1.06 0.002139
Target:  5'- uGAACCCGAUCGACCCCGGCCGGCGCGu -3'
miRNA:   3'- -CUUGGGCUAGCUGGGGCCGGCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 45199 0.66 0.735418
Target:  5'- -cGCUCGAUCuGgCCgGGCgCGAUGCGg -3'
miRNA:   3'- cuUGGGCUAGcUgGGgCCG-GCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 47793 0.7 0.505638
Target:  5'- cAGgCCGGcCG-CgCCGGCCGACGCGu -3'
miRNA:   3'- cUUgGGCUaGCuGgGGCCGGCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 49694 0.66 0.769243
Target:  5'- uGGACCUG-UCGAgCCgcgccgugcaguauCCGGCCGACGa- -3'
miRNA:   3'- -CUUGGGCuAGCU-GG--------------GGCCGGCUGCgc -5'
8066 3' -60.8 NC_001973.1 + 51458 0.69 0.590966
Target:  5'- cGAGCCCGggCGAgCUCgagcggccgGGUCGAUGCGc -3'
miRNA:   3'- -CUUGGGCuaGCUgGGG---------CCGGCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 56359 0.67 0.668708
Target:  5'- cGGGcCCCGAcUCGGCgCCGcGCuCGGCGCc -3'
miRNA:   3'- -CUU-GGGCU-AGCUGgGGC-CG-GCUGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.