miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8066 3' -60.8 NC_001973.1 + 41067 1.06 0.002139
Target:  5'- uGAACCCGAUCGACCCCGGCCGGCGCGu -3'
miRNA:   3'- -CUUGGGCUAGCUGGGGCCGGCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 2673 0.84 0.071594
Target:  5'- -cGCCCGAgcUCGAgCUCGGCCGACGCGu -3'
miRNA:   3'- cuUGGGCU--AGCUgGGGCCGGCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 115035 0.84 0.075335
Target:  5'- uGAACCCGAUCGACCCCGGCgucCGCc -3'
miRNA:   3'- -CUUGGGCUAGCUGGGGCCGgcuGCGc -5'
8066 3' -60.8 NC_001973.1 + 62921 0.77 0.211821
Target:  5'- cGAGCgCCGAuUCGACUCgGGCCGGCGUc -3'
miRNA:   3'- -CUUG-GGCU-AGCUGGGgCCGGCUGCGc -5'
8066 3' -60.8 NC_001973.1 + 21052 0.76 0.227172
Target:  5'- -uGCCCGAgcUCGAgCUCGGCgGGCGCGu -3'
miRNA:   3'- cuUGGGCU--AGCUgGGGCCGgCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 40988 0.76 0.243455
Target:  5'- uGAACUCGAUUGACCCUuGCCaACGCGu -3'
miRNA:   3'- -CUUGGGCUAGCUGGGGcCGGcUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 40831 0.75 0.266661
Target:  5'- uGACCuCcAUCGACCCUaGCCGACGCGu -3'
miRNA:   3'- cUUGG-GcUAGCUGGGGcCGGCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 114726 0.75 0.298144
Target:  5'- uGAACUCGAUUGACCCUuGCCGGCaCGu -3'
miRNA:   3'- -CUUGGGCUAGCUGGGGcCGGCUGcGC- -5'
8066 3' -60.8 NC_001973.1 + 19678 0.74 0.32535
Target:  5'- -uAUUCGAaaUCGcGCCUCGGCCGGCGCGu -3'
miRNA:   3'- cuUGGGCU--AGC-UGGGGCCGGCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 133268 0.74 0.32535
Target:  5'- cAGCUCGGccUCGGCCgCGGCCGAgaaCGCGg -3'
miRNA:   3'- cUUGGGCU--AGCUGGgGCCGGCU---GCGC- -5'
8066 3' -60.8 NC_001973.1 + 115072 0.74 0.332433
Target:  5'- aAACCCGAUucCGGCCUCGGCguccgccgaGGCGCGa -3'
miRNA:   3'- cUUGGGCUA--GCUGGGGCCGg--------CUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 27844 0.73 0.35361
Target:  5'- cGGCCCGGUuggccggcgcuggCGGCCgCGGCCGcggGCGCGg -3'
miRNA:   3'- cUUGGGCUA-------------GCUGGgGCCGGC---UGCGC- -5'
8066 3' -60.8 NC_001973.1 + 150881 0.73 0.361888
Target:  5'- gGAGCCgGGgcgcguuccaCGAgCUCGGCCGACGCGu -3'
miRNA:   3'- -CUUGGgCUa---------GCUgGGGCCGGCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 124494 0.73 0.361888
Target:  5'- -cGCCCGcgcucugcCGGCgCUGGCCGACGCGu -3'
miRNA:   3'- cuUGGGCua------GCUGgGGCCGGCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 150027 0.73 0.36953
Target:  5'- --uCCCGAuucUCGuCCCCgGGCCgGGCGCGg -3'
miRNA:   3'- cuuGGGCU---AGCuGGGG-CCGG-CUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 72340 0.73 0.380413
Target:  5'- aAGCCCGaugacaucaucccuaAcUCGAgCUCGGCCGACGCGu -3'
miRNA:   3'- cUUGGGC---------------U-AGCUgGGGCCGGCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 143154 0.73 0.385142
Target:  5'- -uGCCCGcAUCGACgCCGGgCGGCuGCGu -3'
miRNA:   3'- cuUGGGC-UAGCUGgGGCCgGCUG-CGC- -5'
8066 3' -60.8 NC_001973.1 + 22715 0.72 0.409363
Target:  5'- cGACCUGAUCGACgaCCUGGgCGAgcCGCGg -3'
miRNA:   3'- cUUGGGCUAGCUG--GGGCCgGCU--GCGC- -5'
8066 3' -60.8 NC_001973.1 + 79177 0.72 0.434511
Target:  5'- -cGCCaCGGaCGGCgUCCGGCUGACGCGc -3'
miRNA:   3'- cuUGG-GCUaGCUG-GGGCCGGCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 114957 0.71 0.451765
Target:  5'- uGAACUCuGUUaACCCCuGCCGACGCGu -3'
miRNA:   3'- -CUUGGGcUAGcUGGGGcCGGCUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.