miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8066 3' -60.8 NC_001973.1 + 72198 0.66 0.744686
Target:  5'- cAugCUGAagUUGAgCUCGGCgGACGCGu -3'
miRNA:   3'- cUugGGCU--AGCUgGGGCCGgCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 8828 0.66 0.744686
Target:  5'- cGAGCCCGcccgcCGuCCCgCGcuGCUGGCGCGg -3'
miRNA:   3'- -CUUGGGCua---GCuGGG-GC--CGGCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 117953 0.66 0.735418
Target:  5'- cGGGCgCGAcaucuUCGACUacgagaCGGCCGuGCGCGa -3'
miRNA:   3'- -CUUGgGCU-----AGCUGGg-----GCCGGC-UGCGC- -5'
8066 3' -60.8 NC_001973.1 + 108241 0.66 0.735418
Target:  5'- uGGGCCaaggaGAUCGACggCuGCCGGCGCGc -3'
miRNA:   3'- -CUUGGg----CUAGCUGggGcCGGCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 45199 0.66 0.735418
Target:  5'- -cGCUCGAUCuGgCCgGGCgCGAUGCGg -3'
miRNA:   3'- cuUGGGCUAGcUgGGgCCG-GCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 35156 0.66 0.735418
Target:  5'- -cGCuuGAUggCGACgCUGGCgCGACGCa -3'
miRNA:   3'- cuUGggCUA--GCUGgGGCCG-GCUGCGc -5'
8066 3' -60.8 NC_001973.1 + 2776 0.66 0.729818
Target:  5'- aAGCCCGAUgaGAUcacgccuaaauugagCUCGGCgGACGCGu -3'
miRNA:   3'- cUUGGGCUAg-CUG---------------GGGCCGgCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 72019 0.66 0.726068
Target:  5'- --cCCCaacUCGAgCUCGGCgGACGCGu -3'
miRNA:   3'- cuuGGGcu-AGCUgGGGCCGgCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 155470 0.66 0.726068
Target:  5'- uGAGCCCGcucUCGAgCCCGgugaaucuaccGCCGAgGCc -3'
miRNA:   3'- -CUUGGGCu--AGCUgGGGC-----------CGGCUgCGc -5'
8066 3' -60.8 NC_001973.1 + 16492 0.67 0.720423
Target:  5'- aAGCCCGaugacaucaugcuucGcUCGAgCUCGGCgGACGCGu -3'
miRNA:   3'- cUUGGGC---------------U-AGCUgGGGCCGgCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 16414 0.67 0.720423
Target:  5'- aAGCCCGaugacaucaugcuucGcUCGAgCUCGGCgGACGCGu -3'
miRNA:   3'- cUUGGGC---------------U-AGCUgGGGCCGgCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 32977 0.67 0.716646
Target:  5'- gGAACagaaCGA-CGcacgccaccaccGCCUCGGCCGugGCGc -3'
miRNA:   3'- -CUUGg---GCUaGC------------UGGGGCCGGCugCGC- -5'
8066 3' -60.8 NC_001973.1 + 102239 0.67 0.716646
Target:  5'- --uUCCGAUCGACUgCGcGCCu-CGCGg -3'
miRNA:   3'- cuuGGGCUAGCUGGgGC-CGGcuGCGC- -5'
8066 3' -60.8 NC_001973.1 + 150284 0.67 0.716646
Target:  5'- --cUCUuGUCGGCCCgGGCCGcCGCu -3'
miRNA:   3'- cuuGGGcUAGCUGGGgCCGGCuGCGc -5'
8066 3' -60.8 NC_001973.1 + 26152 0.67 0.716646
Target:  5'- aAGCCCGcgUGGgCCaguuccGCCGGCGCGg -3'
miRNA:   3'- cUUGGGCuaGCUgGGgc----CGGCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 77886 0.67 0.716646
Target:  5'- cGAGCCCGAg-GACCUguGCCGuCGCa -3'
miRNA:   3'- -CUUGGGCUagCUGGGgcCGGCuGCGc -5'
8066 3' -60.8 NC_001973.1 + 7048 0.67 0.713806
Target:  5'- cGAgUCGGUCGugaacgagcugcgcGCCCUGGUCGAgCGCGa -3'
miRNA:   3'- cUUgGGCUAGC--------------UGGGGCCGGCU-GCGC- -5'
8066 3' -60.8 NC_001973.1 + 58030 0.67 0.707158
Target:  5'- -cGCUCGAUCucgGGCUCCGGCggCGGCgGCGg -3'
miRNA:   3'- cuUGGGCUAG---CUGGGGCCG--GCUG-CGC- -5'
8066 3' -60.8 NC_001973.1 + 22998 0.67 0.67838
Target:  5'- cGACgCCGAcgugcaaaaGAUCuuGGCCGACGUGg -3'
miRNA:   3'- cUUG-GGCUag-------CUGGggCCGGCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 14549 0.67 0.67838
Target:  5'- --gUUCGuUCGACggCCGGCCGGCGCa -3'
miRNA:   3'- cuuGGGCuAGCUGg-GGCCGGCUGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.