miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8066 5' -52 NC_001973.1 + 115090 0.68 0.966653
Target:  5'- --gGCGUCCGCCGAGgCgCGAUg---- -3'
miRNA:   3'- augCGCAGGCGGCUC-GaGUUAaaucc -5'
8066 5' -52 NC_001973.1 + 121322 0.68 0.96331
Target:  5'- gACGCG-CCGaCGAGCUCAccgacAGGc -3'
miRNA:   3'- aUGCGCaGGCgGCUCGAGUuaaa-UCC- -5'
8066 5' -52 NC_001973.1 + 78020 0.68 0.96331
Target:  5'- cGCGCGaCCG-CGAGCUCAAa----- -3'
miRNA:   3'- aUGCGCaGGCgGCUCGAGUUaaaucc -5'
8066 5' -52 NC_001973.1 + 65569 0.68 0.95974
Target:  5'- cGCGCG-CUGCgCGAGCUCGucu--GGu -3'
miRNA:   3'- aUGCGCaGGCG-GCUCGAGUuaaauCC- -5'
8066 5' -52 NC_001973.1 + 4894 0.68 0.95974
Target:  5'- aGCGCGUaCGCCGGGUUCGu------ -3'
miRNA:   3'- aUGCGCAgGCGGCUCGAGUuaaaucc -5'
8066 5' -52 NC_001973.1 + 40759 0.68 0.95974
Target:  5'- gACGCG-CUGCCc-GCUCGcUUUAGGc -3'
miRNA:   3'- aUGCGCaGGCGGcuCGAGUuAAAUCC- -5'
8066 5' -52 NC_001973.1 + 72494 0.68 0.955939
Target:  5'- uUACGCGUCgGCCGGGUcgcggCAAUg---- -3'
miRNA:   3'- -AUGCGCAGgCGGCUCGa----GUUAaaucc -5'
8066 5' -52 NC_001973.1 + 160823 0.68 0.955939
Target:  5'- uUACGCGUCgGCCGgAGUcgaUCAucg-AGGu -3'
miRNA:   3'- -AUGCGCAGgCGGC-UCG---AGUuaaaUCC- -5'
8066 5' -52 NC_001973.1 + 83875 0.68 0.955939
Target:  5'- cGCGCG-CgGCgCGAGCUCA----GGGa -3'
miRNA:   3'- aUGCGCaGgCG-GCUCGAGUuaaaUCC- -5'
8066 5' -52 NC_001973.1 + 99033 0.68 0.9519
Target:  5'- cACGUucGcCCGCCGGGCUCGAa----- -3'
miRNA:   3'- aUGCG--CaGGCGGCUCGAGUUaaaucc -5'
8066 5' -52 NC_001973.1 + 31982 0.69 0.947621
Target:  5'- cUGCGCGccgaucUCCGCCGcGCUCAGg----- -3'
miRNA:   3'- -AUGCGC------AGGCGGCuCGAGUUaaaucc -5'
8066 5' -52 NC_001973.1 + 82474 0.69 0.947621
Target:  5'- -cCGUGUCCGCCG-GCcCGAUggAGa -3'
miRNA:   3'- auGCGCAGGCGGCuCGaGUUAaaUCc -5'
8066 5' -52 NC_001973.1 + 130722 0.69 0.938326
Target:  5'- uUACGCGUCgGCCGGGg-CAAUcgAGu -3'
miRNA:   3'- -AUGCGCAGgCGGCUCgaGUUAaaUCc -5'
8066 5' -52 NC_001973.1 + 56543 0.69 0.938326
Target:  5'- gGCGgGcUCggCGCCGAGCUCGAUaucGGGc -3'
miRNA:   3'- aUGCgC-AG--GCGGCUCGAGUUAaa-UCC- -5'
8066 5' -52 NC_001973.1 + 158712 0.69 0.933306
Target:  5'- gACGCccuGUUCGCCGAGaUCAGgcgAGGa -3'
miRNA:   3'- aUGCG---CAGGCGGCUCgAGUUaaaUCC- -5'
8066 5' -52 NC_001973.1 + 23820 0.69 0.928036
Target:  5'- gACGCGgcccUCGCCGAGUUCAAg----- -3'
miRNA:   3'- aUGCGCa---GGCGGCUCGAGUUaaaucc -5'
8066 5' -52 NC_001973.1 + 129006 0.69 0.928036
Target:  5'- uUACGCGUCgGCCaGGgUCGAUaaAGGu -3'
miRNA:   3'- -AUGCGCAGgCGGcUCgAGUUAaaUCC- -5'
8066 5' -52 NC_001973.1 + 95744 0.7 0.904453
Target:  5'- gGCGCGcCCGCCGAcaagaucguGCUCGGcgUGGc -3'
miRNA:   3'- aUGCGCaGGCGGCU---------CGAGUUaaAUCc -5'
8066 5' -52 NC_001973.1 + 23709 0.7 0.891182
Target:  5'- cUGCGCGccaagCCGCUGGGCUCGcugacGGGc -3'
miRNA:   3'- -AUGCGCa----GGCGGCUCGAGUuaaa-UCC- -5'
8066 5' -52 NC_001973.1 + 19713 0.71 0.884187
Target:  5'- cUACGCGUCgGCCGgAGCUCuag--AGu -3'
miRNA:   3'- -AUGCGCAGgCGGC-UCGAGuuaaaUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.