miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8067 5' -58.2 NC_001973.1 + 49031 0.97 0.012122
Target:  5'- uGGCCAAGCAGGGCGACCCGCUgUAc- -3'
miRNA:   3'- -CCGGUUCGUCCCGCUGGGCGAgAUag -5'
8067 5' -58.2 NC_001973.1 + 48246 0.84 0.096169
Target:  5'- cGUCAAGCAGGGUGAUCCGCUgUAUUu -3'
miRNA:   3'- cCGGUUCGUCCCGCUGGGCGAgAUAG- -5'
8067 5' -58.2 NC_001973.1 + 123284 0.73 0.443769
Target:  5'- aGGCCGGGCAGGcGCGGCCaGCg----- -3'
miRNA:   3'- -CCGGUUCGUCC-CGCUGGgCGagauag -5'
8067 5' -58.2 NC_001973.1 + 53318 0.73 0.451876
Target:  5'- aGGCCGucgucuGCAGGGCGucgaugcGCCCGCgccgGUCc -3'
miRNA:   3'- -CCGGUu-----CGUCCCGC-------UGGGCGaga-UAG- -5'
8067 5' -58.2 NC_001973.1 + 55935 0.71 0.528147
Target:  5'- gGGCuCGAGUAGuacGGacucgGGCCCGUUCUGUCg -3'
miRNA:   3'- -CCG-GUUCGUC---CCg----CUGGGCGAGAUAG- -5'
8067 5' -58.2 NC_001973.1 + 83640 0.71 0.557628
Target:  5'- aGGUCGAaaugaacgaagcGCuGcGGCGGCCCGCUCgcuUCg -3'
miRNA:   3'- -CCGGUU------------CGuC-CCGCUGGGCGAGau-AG- -5'
8067 5' -58.2 NC_001973.1 + 152385 0.71 0.557628
Target:  5'- cGGCCGGcgcgggcgggcGCGGGGCGGCgCGCaaacUUAUCg -3'
miRNA:   3'- -CCGGUU-----------CGUCCCGCUGgGCGa---GAUAG- -5'
8067 5' -58.2 NC_001973.1 + 120417 0.7 0.567564
Target:  5'- aGGCCccAGCuGGGCGACgUGCUCc--- -3'
miRNA:   3'- -CCGGu-UCGuCCCGCUGgGCGAGauag -5'
8067 5' -58.2 NC_001973.1 + 63637 0.7 0.576543
Target:  5'- cGGCCGcGUGGGGCGGCgcgccggCCGC-CUGUUu -3'
miRNA:   3'- -CCGGUuCGUCCCGCUG-------GGCGaGAUAG- -5'
8067 5' -58.2 NC_001973.1 + 107000 0.7 0.586557
Target:  5'- uGGaCAAGCuGGGCGACUaucugaaCGgUCUGUCg -3'
miRNA:   3'- -CCgGUUCGuCCCGCUGG-------GCgAGAUAG- -5'
8067 5' -58.2 NC_001973.1 + 100798 0.7 0.616764
Target:  5'- uGGCC-AGCGGGcGCGAaUCGCUCUuguagcaaauuuuGUCg -3'
miRNA:   3'- -CCGGuUCGUCC-CGCUgGGCGAGA-------------UAG- -5'
8067 5' -58.2 NC_001973.1 + 95729 0.69 0.627876
Target:  5'- cGGCUGuuggcGCAGGGCGcGCCCGC-CgacaagAUCg -3'
miRNA:   3'- -CCGGUu----CGUCCCGC-UGGGCGaGa-----UAG- -5'
8067 5' -58.2 NC_001973.1 + 138362 0.69 0.667233
Target:  5'- cGGCCGagcgugccgaagGGCAGGGCcucgcccGACCCGUccaccaucaCUAUCu -3'
miRNA:   3'- -CCGGU------------UCGUCCCG-------CUGGGCGa--------GAUAG- -5'
8067 5' -58.2 NC_001973.1 + 120370 0.69 0.677275
Target:  5'- cGGCCAagacggcgaguuuGGCGGGGCGAugUCCGC-Cg--- -3'
miRNA:   3'- -CCGGU-------------UCGUCCCGCU--GGGCGaGauag -5'
8067 5' -58.2 NC_001973.1 + 137778 0.68 0.697244
Target:  5'- cGGCCAgcaGGUGGGGC-ACCaUGCUCUcguugcaGUCg -3'
miRNA:   3'- -CCGGU---UCGUCCCGcUGG-GCGAGA-------UAG- -5'
8067 5' -58.2 NC_001973.1 + 54977 0.68 0.717981
Target:  5'- aGGCCGgaggcGGCGGcGGCGGCauuuCGCUCa--- -3'
miRNA:   3'- -CCGGU-----UCGUC-CCGCUGg---GCGAGauag -5'
8067 5' -58.2 NC_001973.1 + 53053 0.68 0.737438
Target:  5'- uGGCUuuggAAGaAGGGCG-CCCGC-CUGUUg -3'
miRNA:   3'- -CCGG----UUCgUCCCGCuGGGCGaGAUAG- -5'
8067 5' -58.2 NC_001973.1 + 27866 0.68 0.737438
Target:  5'- cGGCCGcggccGCGGGcGCGGgCgCGCUCUcgCc -3'
miRNA:   3'- -CCGGUu----CGUCC-CGCUgG-GCGAGAuaG- -5'
8067 5' -58.2 NC_001973.1 + 105894 0.67 0.756537
Target:  5'- cGCCGAGCu-GGCGcucGCCCGC-CUcGUCg -3'
miRNA:   3'- cCGGUUCGucCCGC---UGGGCGaGA-UAG- -5'
8067 5' -58.2 NC_001973.1 + 56532 0.67 0.784361
Target:  5'- aGCuCGGGCGGGGCGggcucggcGCCgaGCUCgaUAUCg -3'
miRNA:   3'- cCG-GUUCGUCCCGC--------UGGg-CGAG--AUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.