miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8068 3' -51.6 NC_001973.1 + 107347 0.66 0.984273
Target:  5'- ---cGCACGuccacgccccccgGCGUCGGCCgAGACGAg- -3'
miRNA:   3'- uaaaCGUGC-------------UGCGGUUGG-UCUGCUag -5'
8068 3' -51.6 NC_001973.1 + 43733 0.66 0.984273
Target:  5'- --cUGCuCGAUGgCGACCGcgucgguGACGAUCu -3'
miRNA:   3'- uaaACGuGCUGCgGUUGGU-------CUGCUAG- -5'
8068 3' -51.6 NC_001973.1 + 145787 0.66 0.982504
Target:  5'- uAUUUGUuuGA-GCCGAUCGGGCGGUg -3'
miRNA:   3'- -UAAACGugCUgCGGUUGGUCUGCUAg -5'
8068 3' -51.6 NC_001973.1 + 83117 0.66 0.982504
Target:  5'- --gUGgACGACGCCGACgAauuGGCGcUCa -3'
miRNA:   3'- uaaACgUGCUGCGGUUGgU---CUGCuAG- -5'
8068 3' -51.6 NC_001973.1 + 144214 0.66 0.982504
Target:  5'- ---aGCGCGGCGCCGagGCCGaaucGCuGGUCg -3'
miRNA:   3'- uaaaCGUGCUGCGGU--UGGUc---UG-CUAG- -5'
8068 3' -51.6 NC_001973.1 + 51853 0.66 0.982504
Target:  5'- ---aGCugGGCGCCGucgagcacacGCCcgAGAUGAUUc -3'
miRNA:   3'- uaaaCGugCUGCGGU----------UGG--UCUGCUAG- -5'
8068 3' -51.6 NC_001973.1 + 136592 0.67 0.980368
Target:  5'- ---gGCGCGACGCuCAGCUcgucGGGCGccUCg -3'
miRNA:   3'- uaaaCGUGCUGCG-GUUGG----UCUGCu-AG- -5'
8068 3' -51.6 NC_001973.1 + 35225 0.67 0.980368
Target:  5'- --aUGCAggcCGGCGCgGacgagauguuccGCUGGACGAUCg -3'
miRNA:   3'- uaaACGU---GCUGCGgU------------UGGUCUGCUAG- -5'
8068 3' -51.6 NC_001973.1 + 113491 0.67 0.979691
Target:  5'- -gUUGCGCGcCGCCAgguucguguaggccGCCAccaacACGAUCu -3'
miRNA:   3'- uaAACGUGCuGCGGU--------------UGGUc----UGCUAG- -5'
8068 3' -51.6 NC_001973.1 + 21274 0.67 0.97552
Target:  5'- ---aGcCGCGGCGUCcGCCGGGCcGUCg -3'
miRNA:   3'- uaaaC-GUGCUGCGGuUGGUCUGcUAG- -5'
8068 3' -51.6 NC_001973.1 + 40611 0.67 0.97552
Target:  5'- ---aGCGCGcCGCCGACCAGcaGCa--- -3'
miRNA:   3'- uaaaCGUGCuGCGGUUGGUC--UGcuag -5'
8068 3' -51.6 NC_001973.1 + 87966 0.67 0.97552
Target:  5'- uUUUGUACGugGCgguCGGCCcGuCGGUCg -3'
miRNA:   3'- uAAACGUGCugCG---GUUGGuCuGCUAG- -5'
8068 3' -51.6 NC_001973.1 + 62628 0.67 0.97552
Target:  5'- ---cGCGCG-CGCCGACCuGAUauUCg -3'
miRNA:   3'- uaaaCGUGCuGCGGUUGGuCUGcuAG- -5'
8068 3' -51.6 NC_001973.1 + 109556 0.67 0.97552
Target:  5'- ---cGCGCGaACGCCGgcGCgGGGCGGg- -3'
miRNA:   3'- uaaaCGUGC-UGCGGU--UGgUCUGCUag -5'
8068 3' -51.6 NC_001973.1 + 93560 0.67 0.972793
Target:  5'- --aUGCGCGgcACGCUGGCCgAGgugaGCGGUCg -3'
miRNA:   3'- uaaACGUGC--UGCGGUUGG-UC----UGCUAG- -5'
8068 3' -51.6 NC_001973.1 + 143158 0.67 0.972793
Target:  5'- ---cGCAuCGACGCCGggcgGCUGcGugGAUCg -3'
miRNA:   3'- uaaaCGU-GCUGCGGU----UGGU-CugCUAG- -5'
8068 3' -51.6 NC_001973.1 + 101934 0.67 0.972793
Target:  5'- ---cGUGCGACGgCAGCUcggugacGACGAUCg -3'
miRNA:   3'- uaaaCGUGCUGCgGUUGGu------CUGCUAG- -5'
8068 3' -51.6 NC_001973.1 + 138206 0.67 0.972793
Target:  5'- ---aGCACGACGC-GGCCcu-CGAUCg -3'
miRNA:   3'- uaaaCGUGCUGCGgUUGGucuGCUAG- -5'
8068 3' -51.6 NC_001973.1 + 96035 0.67 0.972793
Target:  5'- ---cGCGCGA-GCUcgGGCUGGGCGGUCu -3'
miRNA:   3'- uaaaCGUGCUgCGG--UUGGUCUGCUAG- -5'
8068 3' -51.6 NC_001973.1 + 48100 0.67 0.972793
Target:  5'- --gUGCuCGcCGCCGAgCAGcCGGUCa -3'
miRNA:   3'- uaaACGuGCuGCGGUUgGUCuGCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.