miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8068 5' -51.5 NC_001973.1 + 93851 0.67 0.978602
Target:  5'- -uGGCCGuGUGGCUGAagguGCGCAu -3'
miRNA:   3'- guUUGGCuUACCGGCUguauCGCGUc -5'
8068 5' -51.5 NC_001973.1 + 35206 0.67 0.978365
Target:  5'- --cGCCGAcgucaccGCCGACAUgcaggccGGCGCGGa -3'
miRNA:   3'- guuUGGCUuac----CGGCUGUA-------UCGCGUC- -5'
8068 5' -51.5 NC_001973.1 + 83976 0.67 0.978126
Target:  5'- gCAGGCCGAgggcacgGUGGCgaaccugaacaccCGGCugaaGGCGCAGa -3'
miRNA:   3'- -GUUUGGCU-------UACCG-------------GCUGua--UCGCGUC- -5'
8068 5' -51.5 NC_001973.1 + 32005 0.67 0.976142
Target:  5'- uCAGGCCGugcaacagcUGGCCGuaacaGUAGgGCAGa -3'
miRNA:   3'- -GUUUGGCuu-------ACCGGCug---UAUCgCGUC- -5'
8068 5' -51.5 NC_001973.1 + 31614 0.67 0.976142
Target:  5'- --cACCGA---GCCGAaAUAGCGCGGc -3'
miRNA:   3'- guuUGGCUuacCGGCUgUAUCGCGUC- -5'
8068 5' -51.5 NC_001973.1 + 47792 0.67 0.976142
Target:  5'- cCAGGCCGGccgcgccGGCCGACGcguGCGCc- -3'
miRNA:   3'- -GUUUGGCUua-----CCGGCUGUau-CGCGuc -5'
8068 5' -51.5 NC_001973.1 + 107890 0.67 0.976142
Target:  5'- -cGGCCGu-UGGCCGACGccgaacugAGCGCc- -3'
miRNA:   3'- guUUGGCuuACCGGCUGUa-------UCGCGuc -5'
8068 5' -51.5 NC_001973.1 + 146010 0.67 0.976142
Target:  5'- gGAGCgGGuccGCCGGCucgAGCGCGGg -3'
miRNA:   3'- gUUUGgCUuacCGGCUGua-UCGCGUC- -5'
8068 5' -51.5 NC_001973.1 + 133285 0.67 0.97348
Target:  5'- -cGGCCGAGaacgcGGCCGGCGgcGGCGCc- -3'
miRNA:   3'- guUUGGCUUa----CCGGCUGUa-UCGCGuc -5'
8068 5' -51.5 NC_001973.1 + 39763 0.68 0.97061
Target:  5'- cCGAGCCGAA--GCUGACGUacacgacuccgcGGCGCGa -3'
miRNA:   3'- -GUUUGGCUUacCGGCUGUA------------UCGCGUc -5'
8068 5' -51.5 NC_001973.1 + 135093 0.68 0.970311
Target:  5'- cCAGGCCGAacacgugGUGGuCCGACAgucGGgGguGa -3'
miRNA:   3'- -GUUUGGCU-------UACC-GGCUGUa--UCgCguC- -5'
8068 5' -51.5 NC_001973.1 + 11651 0.68 0.967523
Target:  5'- uGAACCGcuUGGCCGcugGCAUuucgcuGGCGCuGa -3'
miRNA:   3'- gUUUGGCuuACCGGC---UGUA------UCGCGuC- -5'
8068 5' -51.5 NC_001973.1 + 128561 0.68 0.967523
Target:  5'- uGAACCGcuUGGCCGccgGCAUcucgcuGGCGCuGa -3'
miRNA:   3'- gUUUGGCuuACCGGC---UGUA------UCGCGuC- -5'
8068 5' -51.5 NC_001973.1 + 119187 0.68 0.960676
Target:  5'- uCGAGCCGAc--GCCGAagaAGCGCGGc -3'
miRNA:   3'- -GUUUGGCUuacCGGCUguaUCGCGUC- -5'
8068 5' -51.5 NC_001973.1 + 20523 0.68 0.960676
Target:  5'- uGAACCGuuUGGCCGcugGCAUuuccgaAGCGCc- -3'
miRNA:   3'- gUUUGGCuuACCGGC---UGUA------UCGCGuc -5'
8068 5' -51.5 NC_001973.1 + 65198 0.68 0.956903
Target:  5'- aCAuGCuCGAcaugGGCCGGCAcgAGCGCGa -3'
miRNA:   3'- -GUuUG-GCUua--CCGGCUGUa-UCGCGUc -5'
8068 5' -51.5 NC_001973.1 + 59293 0.69 0.95289
Target:  5'- -cGACCGGucgGGCCGGCcc-GCGCGc -3'
miRNA:   3'- guUUGGCUua-CCGGCUGuauCGCGUc -5'
8068 5' -51.5 NC_001973.1 + 57688 0.69 0.95289
Target:  5'- --cACCGGAUcGCCGGCcucgAGCGCGa -3'
miRNA:   3'- guuUGGCUUAcCGGCUGua--UCGCGUc -5'
8068 5' -51.5 NC_001973.1 + 49702 0.69 0.949936
Target:  5'- uCGAGCCGcgccgugcaguauccGGCCGACG-AGCGCAa -3'
miRNA:   3'- -GUUUGGCuua------------CCGGCUGUaUCGCGUc -5'
8068 5' -51.5 NC_001973.1 + 45257 0.69 0.944129
Target:  5'- uGuuCUGcg-GGCCGGCAaagUAGCGCGGa -3'
miRNA:   3'- gUuuGGCuuaCCGGCUGU---AUCGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.