miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8070 3' -59.4 NC_001973.1 + 145602 0.66 0.787286
Target:  5'- cCGUggaccUGAGCGUCCuCGUCGaGAuuGCUCAa -3'
miRNA:   3'- -GCA-----GCUCGCAGGcGCGGC-CUu-CGAGU- -5'
8070 3' -59.4 NC_001973.1 + 56369 0.66 0.787286
Target:  5'- -cUCG-GCG-CCGCGCuCGGcgccAGGCUCGg -3'
miRNA:   3'- gcAGCuCGCaGGCGCG-GCC----UUCGAGU- -5'
8070 3' -59.4 NC_001973.1 + 77012 0.66 0.787286
Target:  5'- uCGUCGGGCGgcggCgGCGCgcgcaaGGAcgauAGCUCc -3'
miRNA:   3'- -GCAGCUCGCa---GgCGCGg-----CCU----UCGAGu -5'
8070 3' -59.4 NC_001973.1 + 119184 0.66 0.778365
Target:  5'- cCGUCGAGCcgacgCCGaagaaGCgCGGcGGCUCGc -3'
miRNA:   3'- -GCAGCUCGca---GGCg----CG-GCCuUCGAGU- -5'
8070 3' -59.4 NC_001973.1 + 33394 0.67 0.759241
Target:  5'- cCGaCGAcGCGUCCGCGCaauccauCGucAGCUCGg -3'
miRNA:   3'- -GCaGCU-CGCAGGCGCG-------GCcuUCGAGU- -5'
8070 3' -59.4 NC_001973.1 + 55621 0.67 0.750899
Target:  5'- cCGaCGAGCGagCGCGCgugcaGGucGCUCAa -3'
miRNA:   3'- -GCaGCUCGCagGCGCGg----CCuuCGAGU- -5'
8070 3' -59.4 NC_001973.1 + 155523 0.67 0.750899
Target:  5'- cCGUUGAGCGUCC-CGCCcagcccGCUCc -3'
miRNA:   3'- -GCAGCUCGCAGGcGCGGccuu--CGAGu -5'
8070 3' -59.4 NC_001973.1 + 26620 0.67 0.750899
Target:  5'- cCGUUuGGCGgcuuccaagUCCGCGCCGGcGGGC-CAg -3'
miRNA:   3'- -GCAGcUCGC---------AGGCGCGGCC-UUCGaGU- -5'
8070 3' -59.4 NC_001973.1 + 65024 0.67 0.749034
Target:  5'- uGUCGAGCGUCaaguucaacaGCUGGAAGUa-- -3'
miRNA:   3'- gCAGCUCGCAGgcg-------CGGCCUUCGagu -5'
8070 3' -59.4 NC_001973.1 + 29709 0.67 0.741538
Target:  5'- uGagGAGCGUCCGCG-CGGAcauGCa-- -3'
miRNA:   3'- gCagCUCGCAGGCGCgGCCUu--CGagu -5'
8070 3' -59.4 NC_001973.1 + 81083 0.79 0.172913
Target:  5'- gGUCGAugGCGUUCGCGCUGGGcgcgGGCUCGu -3'
miRNA:   3'- gCAGCU--CGCAGGCGCGGCCU----UCGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.