Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8070 | 3' | -59.4 | NC_001973.1 | + | 81083 | 0.79 | 0.172913 |
Target: 5'- gGUCGAugGCGUUCGCGCUGGGcgcgGGCUCGu -3' miRNA: 3'- gCAGCU--CGCAGGCGCGGCCU----UCGAGU- -5' |
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8070 | 3' | -59.4 | NC_001973.1 | + | 53335 | 0.79 | 0.190561 |
Target: 5'- gCGUCGAuGCGcCCGCGCCGGucccacuGCUCu -3' miRNA: 3'- -GCAGCU-CGCaGGCGCGGCCuu-----CGAGu -5' |
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8070 | 3' | -59.4 | NC_001973.1 | + | 56208 | 0.77 | 0.236109 |
Target: 5'- uCGUCG-GCGUCgGCGCCGGgcGCg-- -3' miRNA: 3'- -GCAGCuCGCAGgCGCGGCCuuCGagu -5' |
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8070 | 3' | -59.4 | NC_001973.1 | + | 146427 | 0.72 | 0.444361 |
Target: 5'- aGUCGGG-GUCCGCGUaCGGGucGCUCGc -3' miRNA: 3'- gCAGCUCgCAGGCGCG-GCCUu-CGAGU- -5' |
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8070 | 3' | -59.4 | NC_001973.1 | + | 110809 | 0.72 | 0.480246 |
Target: 5'- aCGaCGAG-G-CCGCGCCGGAcgAGCUCc -3' miRNA: 3'- -GCaGCUCgCaGGCGCGGCCU--UCGAGu -5' |
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8070 | 3' | -59.4 | NC_001973.1 | + | 109187 | 0.71 | 0.508063 |
Target: 5'- uCGcCGAGCGcgCCGCgcaGCCGGcccAGCUCGg -3' miRNA: 3'- -GCaGCUCGCa-GGCG---CGGCCu--UCGAGU- -5' |
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8070 | 3' | -59.4 | NC_001973.1 | + | 83858 | 0.71 | 0.536538 |
Target: 5'- aCG-CGAGCGagcucgcCCGCGCgCGGcgcGAGCUCAg -3' miRNA: 3'- -GCaGCUCGCa------GGCGCG-GCC---UUCGAGU- -5' |
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8070 | 3' | -59.4 | NC_001973.1 | + | 158319 | 0.71 | 0.536538 |
Target: 5'- -uUCGA-CGUCCGCGCCcGAgccGGCUCGu -3' miRNA: 3'- gcAGCUcGCAGGCGCGGcCU---UCGAGU- -5' |
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8070 | 3' | -59.4 | NC_001973.1 | + | 6433 | 0.7 | 0.555828 |
Target: 5'- cCGaCGAGCGcgcCCGuCGCCGGAGccguGCUCGc -3' miRNA: 3'- -GCaGCUCGCa--GGC-GCGGCCUU----CGAGU- -5' |
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8070 | 3' | -59.4 | NC_001973.1 | + | 145068 | 0.7 | 0.565549 |
Target: 5'- aCGUCaaGAGCGUCgugaGCGCCGGcgagggucuGAGCUUc -3' miRNA: 3'- -GCAG--CUCGCAGg---CGCGGCC---------UUCGAGu -5' |
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8070 | 3' | -59.4 | NC_001973.1 | + | 131109 | 0.7 | 0.574335 |
Target: 5'- --aCGGGCGcCCGCGCCaaguugguucugaGGAAGgUCAa -3' miRNA: 3'- gcaGCUCGCaGGCGCGG-------------CCUUCgAGU- -5' |
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8070 | 3' | -59.4 | NC_001973.1 | + | 121297 | 0.7 | 0.593966 |
Target: 5'- cCGUCGcccGCGgCgCGCGCCGGcggacgcgccgacGAGCUCAc -3' miRNA: 3'- -GCAGCu--CGCaG-GCGCGGCC-------------UUCGAGU- -5' |
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8070 | 3' | -59.4 | NC_001973.1 | + | 17854 | 0.69 | 0.631506 |
Target: 5'- cCGUCGAaaaaguaccacgagGCGUCCGCGUCGcGccGCUg- -3' miRNA: 3'- -GCAGCU--------------CGCAGGCGCGGC-CuuCGAgu -5' |
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8070 | 3' | -59.4 | NC_001973.1 | + | 83811 | 0.69 | 0.634476 |
Target: 5'- --aCGAGCugggCCGCGCgCGGcgGAGCUCGa -3' miRNA: 3'- gcaGCUCGca--GGCGCG-GCC--UUCGAGU- -5' |
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8070 | 3' | -59.4 | NC_001973.1 | + | 41410 | 0.69 | 0.64437 |
Target: 5'- uGUCGcGCGccgccUCCGCGUCGGccgacAGGCUCc -3' miRNA: 3'- gCAGCuCGC-----AGGCGCGGCC-----UUCGAGu -5' |
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8070 | 3' | -59.4 | NC_001973.1 | + | 74211 | 0.67 | 0.732087 |
Target: 5'- --aCGAGC-UCgGCGUCGGAGGCg-- -3' miRNA: 3'- gcaGCUCGcAGgCGCGGCCUUCGagu -5' |
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8070 | 3' | -59.4 | NC_001973.1 | + | 159298 | 0.67 | 0.732087 |
Target: 5'- uGUUugaGAGCG-CCGUGCUGGAccuGUUCAa -3' miRNA: 3'- gCAG---CUCGCaGGCGCGGCCUu--CGAGU- -5' |
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8070 | 3' | -59.4 | NC_001973.1 | + | 29709 | 0.67 | 0.741538 |
Target: 5'- uGagGAGCGUCCGCG-CGGAcauGCa-- -3' miRNA: 3'- gCagCUCGCAGGCGCgGCCUu--CGagu -5' |
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8070 | 3' | -59.4 | NC_001973.1 | + | 65024 | 0.67 | 0.749034 |
Target: 5'- uGUCGAGCGUCaaguucaacaGCUGGAAGUa-- -3' miRNA: 3'- gCAGCUCGCAGgcg-------CGGCCUUCGagu -5' |
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8070 | 3' | -59.4 | NC_001973.1 | + | 26620 | 0.67 | 0.750899 |
Target: 5'- cCGUUuGGCGgcuuccaagUCCGCGCCGGcGGGC-CAg -3' miRNA: 3'- -GCAGcUCGC---------AGGCGCGGCC-UUCGaGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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