miRNA display CGI


Results 21 - 31 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8070 3' -59.4 NC_001973.1 + 131109 0.7 0.574335
Target:  5'- --aCGGGCGcCCGCGCCaaguugguucugaGGAAGgUCAa -3'
miRNA:   3'- gcaGCUCGCaGGCGCGG-------------CCUUCgAGU- -5'
8070 3' -59.4 NC_001973.1 + 145068 0.7 0.565549
Target:  5'- aCGUCaaGAGCGUCgugaGCGCCGGcgagggucuGAGCUUc -3'
miRNA:   3'- -GCAG--CUCGCAGg---CGCGGCC---------UUCGAGu -5'
8070 3' -59.4 NC_001973.1 + 6433 0.7 0.555828
Target:  5'- cCGaCGAGCGcgcCCGuCGCCGGAGccguGCUCGc -3'
miRNA:   3'- -GCaGCUCGCa--GGC-GCGGCCUU----CGAGU- -5'
8070 3' -59.4 NC_001973.1 + 158319 0.71 0.536538
Target:  5'- -uUCGA-CGUCCGCGCCcGAgccGGCUCGu -3'
miRNA:   3'- gcAGCUcGCAGGCGCGGcCU---UCGAGU- -5'
8070 3' -59.4 NC_001973.1 + 83858 0.71 0.536538
Target:  5'- aCG-CGAGCGagcucgcCCGCGCgCGGcgcGAGCUCAg -3'
miRNA:   3'- -GCaGCUCGCa------GGCGCG-GCC---UUCGAGU- -5'
8070 3' -59.4 NC_001973.1 + 109187 0.71 0.508063
Target:  5'- uCGcCGAGCGcgCCGCgcaGCCGGcccAGCUCGg -3'
miRNA:   3'- -GCaGCUCGCa-GGCG---CGGCCu--UCGAGU- -5'
8070 3' -59.4 NC_001973.1 + 110809 0.72 0.480246
Target:  5'- aCGaCGAG-G-CCGCGCCGGAcgAGCUCc -3'
miRNA:   3'- -GCaGCUCgCaGGCGCGGCCU--UCGAGu -5'
8070 3' -59.4 NC_001973.1 + 146427 0.72 0.444361
Target:  5'- aGUCGGG-GUCCGCGUaCGGGucGCUCGc -3'
miRNA:   3'- gCAGCUCgCAGGCGCG-GCCUu-CGAGU- -5'
8070 3' -59.4 NC_001973.1 + 56208 0.77 0.236109
Target:  5'- uCGUCG-GCGUCgGCGCCGGgcGCg-- -3'
miRNA:   3'- -GCAGCuCGCAGgCGCGGCCuuCGagu -5'
8070 3' -59.4 NC_001973.1 + 53335 0.79 0.190561
Target:  5'- gCGUCGAuGCGcCCGCGCCGGucccacuGCUCu -3'
miRNA:   3'- -GCAGCU-CGCaGGCGCGGCCuu-----CGAGu -5'
8070 3' -59.4 NC_001973.1 + 81083 0.79 0.172913
Target:  5'- gGUCGAugGCGUUCGCGCUGGGcgcgGGCUCGu -3'
miRNA:   3'- gCAGCU--CGCAGGCGCGGCCU----UCGAGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.