miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8070 5' -47.6 NC_001973.1 + 5780 0.69 0.994437
Target:  5'- cGUCGCCGUggACGAaauaaaCGCGGAGg--CGa -3'
miRNA:   3'- -UAGCGGCAaaUGCU------GCGUUUCuuaGC- -5'
8070 5' -47.6 NC_001973.1 + 10806 0.66 0.999808
Target:  5'- -gCGCCG---ACGGCGgcGAGAAUCGc -3'
miRNA:   3'- uaGCGGCaaaUGCUGCguUUCUUAGC- -5'
8070 5' -47.6 NC_001973.1 + 21556 0.71 0.988691
Target:  5'- -gCGCCGUgguccCGGCGCGcGGggUUGa -3'
miRNA:   3'- uaGCGGCAaau--GCUGCGUuUCuuAGC- -5'
8070 5' -47.6 NC_001973.1 + 21734 0.66 0.999808
Target:  5'- cGUCGCCGgacaaGACGCAuauGGcgCGc -3'
miRNA:   3'- -UAGCGGCaaaugCUGCGUuu-CUuaGC- -5'
8070 5' -47.6 NC_001973.1 + 31925 0.67 0.999503
Target:  5'- cGUUGCCGg-UugGACGCGcGGAAaggCGa -3'
miRNA:   3'- -UAGCGGCaaAugCUGCGUuUCUUa--GC- -5'
8070 5' -47.6 NC_001973.1 + 32428 0.66 0.999679
Target:  5'- cGUUGCCGUccUGCGagaauugGCGCGuGGGAUUGg -3'
miRNA:   3'- -UAGCGGCAa-AUGC-------UGCGUuUCUUAGC- -5'
8070 5' -47.6 NC_001973.1 + 32572 0.66 0.999748
Target:  5'- -cCGCCGUcggcucgGCgcgcugcgacacgGACGCGAAGGAUCc -3'
miRNA:   3'- uaGCGGCAaa-----UG-------------CUGCGUUUCUUAGc -5'
8070 5' -47.6 NC_001973.1 + 35168 0.66 0.999851
Target:  5'- -aCGCUGgc-GCGACGCAgcGAccucGUCGc -3'
miRNA:   3'- uaGCGGCaaaUGCUGCGUuuCU----UAGC- -5'
8070 5' -47.6 NC_001973.1 + 35446 0.68 0.998845
Target:  5'- gGUCGUCGacgaggcgGCGGCGCAGAccGUCGc -3'
miRNA:   3'- -UAGCGGCaaa-----UGCUGCGUUUcuUAGC- -5'
8070 5' -47.6 NC_001973.1 + 39268 0.67 0.999381
Target:  5'- cGUCGCCGUc-GCGGCGCAGc------ -3'
miRNA:   3'- -UAGCGGCAaaUGCUGCGUUucuuagc -5'
8070 5' -47.6 NC_001973.1 + 42596 0.75 0.897702
Target:  5'- cUCGCCaaggaggUGCGGCGCGAGGGcgCGg -3'
miRNA:   3'- uAGCGGcaa----AUGCUGCGUUUCUuaGC- -5'
8070 5' -47.6 NC_001973.1 + 51180 0.68 0.997511
Target:  5'- cGUCGCgCGUaaauuuuccaguuUUACGAauCGCAGgcAGAAUCGu -3'
miRNA:   3'- -UAGCG-GCA-------------AAUGCU--GCGUU--UCUUAGC- -5'
8070 5' -47.6 NC_001973.1 + 51661 0.66 0.999808
Target:  5'- -cCGCCG---AgGACGCGGAGGcgCGc -3'
miRNA:   3'- uaGCGGCaaaUgCUGCGUUUCUuaGC- -5'
8070 5' -47.6 NC_001973.1 + 51886 0.68 0.998798
Target:  5'- uUCGCCGgcugugaggaACGuCGCGGAGGAcUCGg -3'
miRNA:   3'- uAGCGGCaaa-------UGCuGCGUUUCUU-AGC- -5'
8070 5' -47.6 NC_001973.1 + 55425 0.67 0.999536
Target:  5'- uUCGUCGgcggcggcgggcccgACGGCGCGgcGGAUCGu -3'
miRNA:   3'- uAGCGGCaaa------------UGCUGCGUuuCUUAGC- -5'
8070 5' -47.6 NC_001973.1 + 56173 0.69 0.995235
Target:  5'- cGUCGCUGUcgGCGGCGCGcucGAcguaGUCGc -3'
miRNA:   3'- -UAGCGGCAaaUGCUGCGUuu-CU----UAGC- -5'
8070 5' -47.6 NC_001973.1 + 57214 0.67 0.999503
Target:  5'- --gGCCGUcgACGACGUcGAG-GUCGc -3'
miRNA:   3'- uagCGGCAaaUGCUGCGuUUCuUAGC- -5'
8070 5' -47.6 NC_001973.1 + 57929 0.67 0.999056
Target:  5'- gGUCGCCGUacACGACGUggGcGA-CGg -3'
miRNA:   3'- -UAGCGGCAaaUGCUGCGuuUcUUaGC- -5'
8070 5' -47.6 NC_001973.1 + 74130 0.7 0.991257
Target:  5'- -gUGCCGUcggggaaUUGCG-CGCAgcGAGAGUCGc -3'
miRNA:   3'- uaGCGGCA-------AAUGCuGCGU--UUCUUAGC- -5'
8070 5' -47.6 NC_001973.1 + 74791 0.68 0.997554
Target:  5'- gGUCGCCGggguggGCGcgcACGCGAGGcgcGUCGu -3'
miRNA:   3'- -UAGCGGCaaa---UGC---UGCGUUUCu--UAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.