miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8070 5' -47.6 NC_001973.1 + 51886 0.68 0.998798
Target:  5'- uUCGCCGgcugugaggaACGuCGCGGAGGAcUCGg -3'
miRNA:   3'- uAGCGGCaaa-------UGCuGCGUUUCUU-AGC- -5'
8070 5' -47.6 NC_001973.1 + 80520 0.68 0.998595
Target:  5'- uGUCGCCGUaUAUGACGgaGAAGuuuauuuUCGa -3'
miRNA:   3'- -UAGCGGCAaAUGCUGCg-UUUCuu-----AGC- -5'
8070 5' -47.6 NC_001973.1 + 143165 0.68 0.998301
Target:  5'- -aCGCCGg--GCGGCuGCGu-GGAUCGg -3'
miRNA:   3'- uaGCGGCaaaUGCUG-CGUuuCUUAGC- -5'
8070 5' -47.6 NC_001973.1 + 74791 0.68 0.997554
Target:  5'- gGUCGCCGggguggGCGcgcACGCGAGGcgcGUCGu -3'
miRNA:   3'- -UAGCGGCaaa---UGC---UGCGUUUCu--UAGC- -5'
8070 5' -47.6 NC_001973.1 + 51180 0.68 0.997511
Target:  5'- cGUCGCgCGUaaauuuuccaguuUUACGAauCGCAGgcAGAAUCGu -3'
miRNA:   3'- -UAGCG-GCA-------------AAUGCU--GCGUU--UCUUAGC- -5'
8070 5' -47.6 NC_001973.1 + 83411 0.69 0.997089
Target:  5'- cUCGCCucGUcgGCGACGCGgcAAGAAUa- -3'
miRNA:   3'- uAGCGG--CAaaUGCUGCGU--UUCUUAgc -5'
8070 5' -47.6 NC_001973.1 + 124241 0.69 0.996553
Target:  5'- -cCGCCGUUUACGAagcgcugcugUGCAuGGAcgUGg -3'
miRNA:   3'- uaGCGGCAAAUGCU----------GCGUuUCUuaGC- -5'
8070 5' -47.6 NC_001973.1 + 56173 0.69 0.995235
Target:  5'- cGUCGCUGUcgGCGGCGCGcucGAcguaGUCGc -3'
miRNA:   3'- -UAGCGGCAaaUGCUGCGUuu-CU----UAGC- -5'
8070 5' -47.6 NC_001973.1 + 5780 0.69 0.994437
Target:  5'- cGUCGCCGUggACGAaauaaaCGCGGAGg--CGa -3'
miRNA:   3'- -UAGCGGCAaaUGCU------GCGUUUCuuaGC- -5'
8070 5' -47.6 NC_001973.1 + 79977 0.7 0.992518
Target:  5'- gAUCGCCGUUgcCGG-GCAGAaAGUCGa -3'
miRNA:   3'- -UAGCGGCAAauGCUgCGUUUcUUAGC- -5'
8070 5' -47.6 NC_001973.1 + 74130 0.7 0.991257
Target:  5'- -gUGCCGUcggggaaUUGCG-CGCAgcGAGAGUCGc -3'
miRNA:   3'- uaGCGGCA-------AAUGCuGCGU--UUCUUAGC- -5'
8070 5' -47.6 NC_001973.1 + 79703 0.71 0.988691
Target:  5'- uUUGCCGgcuuUGGCGCGucGggUCGg -3'
miRNA:   3'- uAGCGGCaaauGCUGCGUuuCuuAGC- -5'
8070 5' -47.6 NC_001973.1 + 21556 0.71 0.988691
Target:  5'- -gCGCCGUgguccCGGCGCGcGGggUUGa -3'
miRNA:   3'- uaGCGGCAaau--GCUGCGUuUCuuAGC- -5'
8070 5' -47.6 NC_001973.1 + 90174 0.72 0.971073
Target:  5'- aAUCGCCGUgcauccgaaGCGGCGC-GAGAcuGUCGu -3'
miRNA:   3'- -UAGCGGCAaa-------UGCUGCGuUUCU--UAGC- -5'
8070 5' -47.6 NC_001973.1 + 154036 0.72 0.967948
Target:  5'- uGUCGCCGggccCGAUGCAGuuuGAGUCu -3'
miRNA:   3'- -UAGCGGCaaauGCUGCGUUu--CUUAGc -5'
8070 5' -47.6 NC_001973.1 + 42596 0.75 0.897702
Target:  5'- cUCGCCaaggaggUGCGGCGCGAGGGcgCGg -3'
miRNA:   3'- uAGCGGcaa----AUGCUGCGUUUCUuaGC- -5'
8070 5' -47.6 NC_001973.1 + 105342 0.76 0.888574
Target:  5'- uUCGCCGUguuguucucgacgaaGCGGCGCGGAGGcGUCGg -3'
miRNA:   3'- uAGCGGCAaa-------------UGCUGCGUUUCU-UAGC- -5'
8070 5' -47.6 NC_001973.1 + 93295 0.76 0.883483
Target:  5'- gAUUGCCGUgUACGACGCAA--AAUUGg -3'
miRNA:   3'- -UAGCGGCAaAUGCUGCGUUucUUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.