Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8073 | 5' | -53.5 | NC_001978.2 | + | 1775 | 1.09 | 0.001233 |
Target: 5'- uUGUACCGGAUCACGUCGCGCUGAACGu -3' miRNA: 3'- -ACAUGGCCUAGUGCAGCGCGACUUGC- -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 39101 | 0.79 | 0.153201 |
Target: 5'- --cACCGGAUUACGUCGgGCUcGAACu -3' miRNA: 3'- acaUGGCCUAGUGCAGCgCGA-CUUGc -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 39410 | 0.79 | 0.162056 |
Target: 5'- --gGCCGGAgcgugaUCGgGUCGCGCUGAAUGc -3' miRNA: 3'- acaUGGCCU------AGUgCAGCGCGACUUGC- -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 25899 | 0.74 | 0.324455 |
Target: 5'- -uUGCCGGGcacgguaucgaCGCGUaCGCGCUGAACGu -3' miRNA: 3'- acAUGGCCUa----------GUGCA-GCGCGACUUGC- -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 30402 | 0.72 | 0.384057 |
Target: 5'- gGUGCCGugucgcucgacaaGGUCACGUCG-GCUGAgaacGCGg -3' miRNA: 3'- aCAUGGC-------------CUAGUGCAGCgCGACU----UGC- -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 30251 | 0.72 | 0.403583 |
Target: 5'- gUGUGCCGucaacGGUCGCGUacacguaGCGCUcGAACGc -3' miRNA: 3'- -ACAUGGC-----CUAGUGCAg------CGCGA-CUUGC- -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 25861 | 0.71 | 0.44146 |
Target: 5'- --gGCCGGAgucggcuUCACGcUGCGCcUGAGCGa -3' miRNA: 3'- acaUGGCCU-------AGUGCaGCGCG-ACUUGC- -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 41182 | 0.71 | 0.442458 |
Target: 5'- cUGUGCCugauaGGUgGCGUgGUGCUGAGCa -3' miRNA: 3'- -ACAUGGc----CUAgUGCAgCGCGACUUGc -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 23903 | 0.71 | 0.442458 |
Target: 5'- --cGCCGGAagCcCGUCGCGCUGuGCu -3' miRNA: 3'- acaUGGCCUa-GuGCAGCGCGACuUGc -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 14987 | 0.71 | 0.48336 |
Target: 5'- cGUGCCGG--UACGcaCGCGCUGAuagACGa -3' miRNA: 3'- aCAUGGCCuaGUGCa-GCGCGACU---UGC- -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 1139 | 0.7 | 0.493871 |
Target: 5'- aGUACCGGGUCgGgGUgGCGUUG-GCGu -3' miRNA: 3'- aCAUGGCCUAG-UgCAgCGCGACuUGC- -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 38578 | 0.7 | 0.515194 |
Target: 5'- --cGCCGGG-CACGUCGgCGUucgGGACGg -3' miRNA: 3'- acaUGGCCUaGUGCAGC-GCGa--CUUGC- -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 4519 | 0.7 | 0.525996 |
Target: 5'- cGUGCCGGAagACGU-GCGCcccaguaggGAACGc -3' miRNA: 3'- aCAUGGCCUagUGCAgCGCGa--------CUUGC- -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 32261 | 0.7 | 0.536882 |
Target: 5'- cGUcgACCGGGUCACGaCGCccaGC-GGACGg -3' miRNA: 3'- aCA--UGGCCUAGUGCaGCG---CGaCUUGC- -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 37880 | 0.69 | 0.558877 |
Target: 5'- cGUcCCGuacaACGUCGCGCgUGAGCGg -3' miRNA: 3'- aCAuGGCcuagUGCAGCGCG-ACUUGC- -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 31704 | 0.69 | 0.558877 |
Target: 5'- gGUG-CGGAUucgauucgCGCGaCGCGCUGAACa -3' miRNA: 3'- aCAUgGCCUA--------GUGCaGCGCGACUUGc -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 9028 | 0.69 | 0.569971 |
Target: 5'- --cGCCGGuAUCGCuGagGCGCUuGAGCGg -3' miRNA: 3'- acaUGGCC-UAGUG-CagCGCGA-CUUGC- -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 6566 | 0.69 | 0.569971 |
Target: 5'- cGUGCCGGGUgACGuucagugcaccuUCGCGgaG-ACGg -3' miRNA: 3'- aCAUGGCCUAgUGC------------AGCGCgaCuUGC- -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 6751 | 0.69 | 0.569971 |
Target: 5'- cGUaGCCGG-UCACGuugguuggcuUCGCGCcgGAGCGc -3' miRNA: 3'- aCA-UGGCCuAGUGC----------AGCGCGa-CUUGC- -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 1745 | 0.69 | 0.569971 |
Target: 5'- -uUACCGGGUCGUGUCGgcggaCGCcGGACGg -3' miRNA: 3'- acAUGGCCUAGUGCAGC-----GCGaCUUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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