Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8073 | 5' | -53.5 | NC_001978.2 | + | 32106 | 0.66 | 0.733978 |
Target: 5'- cGUGCCGuGAUgaccccggcucaggCGCGUCaGCuugccgcaugGCUGAACGa -3' miRNA: 3'- aCAUGGC-CUA--------------GUGCAG-CG----------CGACUUGC- -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 39786 | 0.69 | 0.581118 |
Target: 5'- uUGUugCGGAgCGCGcCGaCGCccUGAACGc -3' miRNA: 3'- -ACAugGCCUaGUGCaGC-GCG--ACUUGC- -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 6736 | 0.68 | 0.603536 |
Target: 5'- --cGCCGGG-CAauccgGUCGaCGCUGAGCGc -3' miRNA: 3'- acaUGGCCUaGUg----CAGC-GCGACUUGC- -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 19875 | 0.68 | 0.614788 |
Target: 5'- cGUGCCGGGggccgaCGCGauucaCGCGCUccgGAACGc -3' miRNA: 3'- aCAUGGCCUa-----GUGCa----GCGCGA---CUUGC- -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 14380 | 0.68 | 0.6486 |
Target: 5'- -uUACCGGcacgacGUCcCG-CGCGCUGGGCa -3' miRNA: 3'- acAUGGCC------UAGuGCaGCGCGACUUGc -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 4535 | 0.68 | 0.659853 |
Target: 5'- --gACCGuuGGUCGCGaCGuCGCUGAGCu -3' miRNA: 3'- acaUGGC--CUAGUGCaGC-GCGACUUGc -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 13243 | 0.67 | 0.671079 |
Target: 5'- --cGCCGGAaCGC-UCaCGCUGAACGc -3' miRNA: 3'- acaUGGCCUaGUGcAGcGCGACUUGC- -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 38184 | 0.67 | 0.682267 |
Target: 5'- cGUGCCGGAgCAa-UCGCcCUGggUGg -3' miRNA: 3'- aCAUGGCCUaGUgcAGCGcGACuuGC- -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 24314 | 0.66 | 0.726396 |
Target: 5'- cGUGCCGGggCuuGUCGuCGUUcAGCGu -3' miRNA: 3'- aCAUGGCCuaGugCAGC-GCGAcUUGC- -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 9028 | 0.69 | 0.569971 |
Target: 5'- --cGCCGGuAUCGCuGagGCGCUuGAGCGg -3' miRNA: 3'- acaUGGCC-UAGUG-CagCGCGA-CUUGC- -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 1745 | 0.69 | 0.569971 |
Target: 5'- -uUACCGGGUCGUGUCGgcggaCGCcGGACGg -3' miRNA: 3'- acAUGGCCUAGUGCAGC-----GCGaCUUGC- -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 6566 | 0.69 | 0.569971 |
Target: 5'- cGUGCCGGGUgACGuucagugcaccuUCGCGgaG-ACGg -3' miRNA: 3'- aCAUGGCCUAgUGC------------AGCGCgaCuUGC- -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 30402 | 0.72 | 0.384057 |
Target: 5'- gGUGCCGugucgcucgacaaGGUCACGUCG-GCUGAgaacGCGg -3' miRNA: 3'- aCAUGGC-------------CUAGUGCAGCgCGACU----UGC- -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 25861 | 0.71 | 0.44146 |
Target: 5'- --gGCCGGAgucggcuUCACGcUGCGCcUGAGCGa -3' miRNA: 3'- acaUGGCCU-------AGUGCaGCGCG-ACUUGC- -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 23903 | 0.71 | 0.442458 |
Target: 5'- --cGCCGGAagCcCGUCGCGCUGuGCu -3' miRNA: 3'- acaUGGCCUa-GuGCAGCGCGACuUGc -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 1139 | 0.7 | 0.493871 |
Target: 5'- aGUACCGGGUCgGgGUgGCGUUG-GCGu -3' miRNA: 3'- aCAUGGCCUAG-UgCAgCGCGACuUGC- -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 38578 | 0.7 | 0.515194 |
Target: 5'- --cGCCGGG-CACGUCGgCGUucgGGACGg -3' miRNA: 3'- acaUGGCCUaGUGCAGC-GCGa--CUUGC- -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 32261 | 0.7 | 0.536882 |
Target: 5'- cGUcgACCGGGUCACGaCGCccaGC-GGACGg -3' miRNA: 3'- aCA--UGGCCUAGUGCaGCG---CGaCUUGC- -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 31704 | 0.69 | 0.558877 |
Target: 5'- gGUG-CGGAUucgauucgCGCGaCGCGCUGAACa -3' miRNA: 3'- aCAUgGCCUA--------GUGCaGCGCGACUUGc -5' |
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8073 | 5' | -53.5 | NC_001978.2 | + | 37880 | 0.69 | 0.558877 |
Target: 5'- cGUcCCGuacaACGUCGCGCgUGAGCGg -3' miRNA: 3'- aCAuGGCcuagUGCAGCGCG-ACUUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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