miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8074 3' -58.1 NC_001978.2 + 35023 0.66 0.492639
Target:  5'- -uUGUCuGUCUGGguCCCGUcagguGCUGCCCGc -3'
miRNA:   3'- uuACAGcUAGGCC--GGGUA-----UGGCGGGC- -5'
8074 3' -58.1 NC_001978.2 + 32906 0.66 0.492639
Target:  5'- aGGUGUCGGUgUCGGCUCAgcuCCGUCa- -3'
miRNA:   3'- -UUACAGCUA-GGCCGGGUau-GGCGGgc -5'
8074 3' -58.1 NC_001978.2 + 25959 0.66 0.492639
Target:  5'- --cGUCGAUaCCGuGCCCGgcaaGCCCu -3'
miRNA:   3'- uuaCAGCUA-GGC-CGGGUauggCGGGc -5'
8074 3' -58.1 NC_001978.2 + 16009 0.66 0.472144
Target:  5'- --cGUCGAgUCgGcGCCCGU-CgCGCCCGu -3'
miRNA:   3'- uuaCAGCU-AGgC-CGGGUAuG-GCGGGC- -5'
8074 3' -58.1 NC_001978.2 + 31562 0.66 0.452089
Target:  5'- ----cCG-UCCGGCCCGUACaCGUgCGa -3'
miRNA:   3'- uuacaGCuAGGCCGGGUAUG-GCGgGC- -5'
8074 3' -58.1 NC_001978.2 + 22283 0.66 0.452089
Target:  5'- ----aCGAUCCGGCauagCCGUACgUGUCCGa -3'
miRNA:   3'- uuacaGCUAGGCCG----GGUAUG-GCGGGC- -5'
8074 3' -58.1 NC_001978.2 + 11708 0.66 0.442237
Target:  5'- --gGUCG-UCCGGCgCCGguccCUGCCCu -3'
miRNA:   3'- uuaCAGCuAGGCCG-GGUau--GGCGGGc -5'
8074 3' -58.1 NC_001978.2 + 6824 0.66 0.442237
Target:  5'- uGUGUCGGUCCcggGGCUCAuggacgUACgGCCgGa -3'
miRNA:   3'- uUACAGCUAGG---CCGGGU------AUGgCGGgC- -5'
8074 3' -58.1 NC_001978.2 + 22490 0.67 0.404089
Target:  5'- --gGUCGAgaCUGGCCCGgacgucuUCGCCCa -3'
miRNA:   3'- uuaCAGCUa-GGCCGGGUau-----GGCGGGc -5'
8074 3' -58.1 NC_001978.2 + 19760 0.68 0.376879
Target:  5'- --aGUCGAgcgcUUCGGCCCAguccaUGCCCa -3'
miRNA:   3'- uuaCAGCU----AGGCCGGGUaug--GCGGGc -5'
8074 3' -58.1 NC_001978.2 + 4681 0.68 0.350931
Target:  5'- --cGUCGucGUCC-GCCCGUcGCUGCCCa -3'
miRNA:   3'- uuaCAGC--UAGGcCGGGUA-UGGCGGGc -5'
8074 3' -58.1 NC_001978.2 + 10278 0.7 0.288095
Target:  5'- --cGUUGAgUCCGGCCUGaa-CGCCCGa -3'
miRNA:   3'- uuaCAGCU-AGGCCGGGUaugGCGGGC- -5'
8074 3' -58.1 NC_001978.2 + 22484 0.7 0.280893
Target:  5'- --cGUCGAacUCCGGCaucgguucCCGguUGCCGUCCGg -3'
miRNA:   3'- uuaCAGCU--AGGCCG--------GGU--AUGGCGGGC- -5'
8074 3' -58.1 NC_001978.2 + 17844 0.7 0.273835
Target:  5'- cGUGUCGGcgucggaccaaUUCGGCCCcggACCGUCCu -3'
miRNA:   3'- uUACAGCU-----------AGGCCGGGua-UGGCGGGc -5'
8074 3' -58.1 NC_001978.2 + 7103 0.7 0.260147
Target:  5'- -cUGUCGGcuUCCGGgCCGguaugcagACUGCCCGc -3'
miRNA:   3'- uuACAGCU--AGGCCgGGUa-------UGGCGGGC- -5'
8074 3' -58.1 NC_001978.2 + 37248 0.71 0.216604
Target:  5'- -uUGUCGc-CCGGUCCGUAUCGgCCGg -3'
miRNA:   3'- uuACAGCuaGGCCGGGUAUGGCgGGC- -5'
8074 3' -58.1 NC_001978.2 + 1346 0.78 0.077116
Target:  5'- --gGUCGAuUCCGGCCCAguCCGCCaCGg -3'
miRNA:   3'- uuaCAGCU-AGGCCGGGUauGGCGG-GC- -5'
8074 3' -58.1 NC_001978.2 + 3239 1.07 0.000484
Target:  5'- gAAUGUCGAUCCGGCCCAUACCGCCCGg -3'
miRNA:   3'- -UUACAGCUAGGCCGGGUAUGGCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.