Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8074 | 3' | -58.1 | NC_001978.2 | + | 35023 | 0.66 | 0.492639 |
Target: 5'- -uUGUCuGUCUGGguCCCGUcagguGCUGCCCGc -3' miRNA: 3'- uuACAGcUAGGCC--GGGUA-----UGGCGGGC- -5' |
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8074 | 3' | -58.1 | NC_001978.2 | + | 32906 | 0.66 | 0.492639 |
Target: 5'- aGGUGUCGGUgUCGGCUCAgcuCCGUCa- -3' miRNA: 3'- -UUACAGCUA-GGCCGGGUau-GGCGGgc -5' |
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8074 | 3' | -58.1 | NC_001978.2 | + | 25959 | 0.66 | 0.492639 |
Target: 5'- --cGUCGAUaCCGuGCCCGgcaaGCCCu -3' miRNA: 3'- uuaCAGCUA-GGC-CGGGUauggCGGGc -5' |
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8074 | 3' | -58.1 | NC_001978.2 | + | 16009 | 0.66 | 0.472144 |
Target: 5'- --cGUCGAgUCgGcGCCCGU-CgCGCCCGu -3' miRNA: 3'- uuaCAGCU-AGgC-CGGGUAuG-GCGGGC- -5' |
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8074 | 3' | -58.1 | NC_001978.2 | + | 22283 | 0.66 | 0.452089 |
Target: 5'- ----aCGAUCCGGCauagCCGUACgUGUCCGa -3' miRNA: 3'- uuacaGCUAGGCCG----GGUAUG-GCGGGC- -5' |
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8074 | 3' | -58.1 | NC_001978.2 | + | 31562 | 0.66 | 0.452089 |
Target: 5'- ----cCG-UCCGGCCCGUACaCGUgCGa -3' miRNA: 3'- uuacaGCuAGGCCGGGUAUG-GCGgGC- -5' |
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8074 | 3' | -58.1 | NC_001978.2 | + | 11708 | 0.66 | 0.442237 |
Target: 5'- --gGUCG-UCCGGCgCCGguccCUGCCCu -3' miRNA: 3'- uuaCAGCuAGGCCG-GGUau--GGCGGGc -5' |
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8074 | 3' | -58.1 | NC_001978.2 | + | 6824 | 0.66 | 0.442237 |
Target: 5'- uGUGUCGGUCCcggGGCUCAuggacgUACgGCCgGa -3' miRNA: 3'- uUACAGCUAGG---CCGGGU------AUGgCGGgC- -5' |
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8074 | 3' | -58.1 | NC_001978.2 | + | 22490 | 0.67 | 0.404089 |
Target: 5'- --gGUCGAgaCUGGCCCGgacgucuUCGCCCa -3' miRNA: 3'- uuaCAGCUa-GGCCGGGUau-----GGCGGGc -5' |
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8074 | 3' | -58.1 | NC_001978.2 | + | 19760 | 0.68 | 0.376879 |
Target: 5'- --aGUCGAgcgcUUCGGCCCAguccaUGCCCa -3' miRNA: 3'- uuaCAGCU----AGGCCGGGUaug--GCGGGc -5' |
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8074 | 3' | -58.1 | NC_001978.2 | + | 4681 | 0.68 | 0.350931 |
Target: 5'- --cGUCGucGUCC-GCCCGUcGCUGCCCa -3' miRNA: 3'- uuaCAGC--UAGGcCGGGUA-UGGCGGGc -5' |
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8074 | 3' | -58.1 | NC_001978.2 | + | 10278 | 0.7 | 0.288095 |
Target: 5'- --cGUUGAgUCCGGCCUGaa-CGCCCGa -3' miRNA: 3'- uuaCAGCU-AGGCCGGGUaugGCGGGC- -5' |
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8074 | 3' | -58.1 | NC_001978.2 | + | 22484 | 0.7 | 0.280893 |
Target: 5'- --cGUCGAacUCCGGCaucgguucCCGguUGCCGUCCGg -3' miRNA: 3'- uuaCAGCU--AGGCCG--------GGU--AUGGCGGGC- -5' |
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8074 | 3' | -58.1 | NC_001978.2 | + | 17844 | 0.7 | 0.273835 |
Target: 5'- cGUGUCGGcgucggaccaaUUCGGCCCcggACCGUCCu -3' miRNA: 3'- uUACAGCU-----------AGGCCGGGua-UGGCGGGc -5' |
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8074 | 3' | -58.1 | NC_001978.2 | + | 7103 | 0.7 | 0.260147 |
Target: 5'- -cUGUCGGcuUCCGGgCCGguaugcagACUGCCCGc -3' miRNA: 3'- uuACAGCU--AGGCCgGGUa-------UGGCGGGC- -5' |
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8074 | 3' | -58.1 | NC_001978.2 | + | 37248 | 0.71 | 0.216604 |
Target: 5'- -uUGUCGc-CCGGUCCGUAUCGgCCGg -3' miRNA: 3'- uuACAGCuaGGCCGGGUAUGGCgGGC- -5' |
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8074 | 3' | -58.1 | NC_001978.2 | + | 1346 | 0.78 | 0.077116 |
Target: 5'- --gGUCGAuUCCGGCCCAguCCGCCaCGg -3' miRNA: 3'- uuaCAGCU-AGGCCGGGUauGGCGG-GC- -5' |
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8074 | 3' | -58.1 | NC_001978.2 | + | 3239 | 1.07 | 0.000484 |
Target: 5'- gAAUGUCGAUCCGGCCCAUACCGCCCGg -3' miRNA: 3'- -UUACAGCUAGGCCGGGUAUGGCGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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