miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8074 5' -55.2 NC_001978.2 + 33251 0.66 0.63198
Target:  5'- -aCGGcgugaagGUGGUCGAGCacccgaCCGGCGa -3'
miRNA:   3'- aaGCC-------UAUCAGCUCGguaa--GGCCGCa -5'
8074 5' -55.2 NC_001978.2 + 27132 0.66 0.621776
Target:  5'- --aGGucGUAGUCGcGCUcUUCCGGCGc -3'
miRNA:   3'- aagCC--UAUCAGCuCGGuAAGGCCGCa -5'
8074 5' -55.2 NC_001978.2 + 37492 0.67 0.532237
Target:  5'- gUCGGcGUAGgcgGAGCgCAcUCCGGCGg -3'
miRNA:   3'- aAGCC-UAUCag-CUCG-GUaAGGCCGCa -5'
8074 5' -55.2 NC_001978.2 + 35823 0.68 0.478619
Target:  5'- -gCGGGagUGGUCGAGCUGggcgaCGGCGUu -3'
miRNA:   3'- aaGCCU--AUCAGCUCGGUaag--GCCGCA- -5'
8074 5' -55.2 NC_001978.2 + 4680 0.7 0.365865
Target:  5'- -aUGGAcgUGGUCGAGCUGgggccgguugugaaUCCGGCGUa -3'
miRNA:   3'- aaGCCU--AUCAGCUCGGUa-------------AGGCCGCA- -5'
8074 5' -55.2 NC_001978.2 + 1395 0.71 0.353548
Target:  5'- -aCGGGUucguucgccGGUC-AGCCGUUCCGGCu- -3'
miRNA:   3'- aaGCCUA---------UCAGcUCGGUAAGGCCGca -5'
8074 5' -55.2 NC_001978.2 + 39637 0.71 0.328153
Target:  5'- -gCGGAcgGGUCGA-CCAccUUCCGGCGa -3'
miRNA:   3'- aaGCCUa-UCAGCUcGGU--AAGGCCGCa -5'
8074 5' -55.2 NC_001978.2 + 12184 0.72 0.301807
Target:  5'- gUgGGcAUGGUCGAgcggagagacgguuGCCAUUCCGGCa- -3'
miRNA:   3'- aAgCC-UAUCAGCU--------------CGGUAAGGCCGca -5'
8074 5' -55.2 NC_001978.2 + 35563 0.72 0.296432
Target:  5'- -cCGGAU-GUCGAGCCGgagaCGGCGc -3'
miRNA:   3'- aaGCCUAuCAGCUCGGUaag-GCCGCa -5'
8074 5' -55.2 NC_001978.2 + 26075 0.72 0.296432
Target:  5'- -gCGGAcgGGUCGAGCCGacuugaCGGCGUc -3'
miRNA:   3'- aaGCCUa-UCAGCUCGGUaag---GCCGCA- -5'
8074 5' -55.2 NC_001978.2 + 3205 1.04 0.001368
Target:  5'- gUUCGGAUAGUCGAGCCAUUCCGGCGUc -3'
miRNA:   3'- -AAGCCUAUCAGCUCGGUAAGGCCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.