Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8075 | 3' | -59.1 | NC_001978.2 | + | 18333 | 0.66 | 0.475905 |
Target: 5'- uGGgcgaagGCUCacccgaagGUCGUCaCGUCCGUCGUcGUc -3' miRNA: 3'- -CCa-----CGAG--------CAGCAG-GCGGGCAGCGaCG- -5' |
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8075 | 3' | -59.1 | NC_001978.2 | + | 2857 | 0.67 | 0.440833 |
Target: 5'- gGGUGCacgaagacguugccuUCGUCGUCUuCCCagGUCGCgauaauugGCu -3' miRNA: 3'- -CCACG---------------AGCAGCAGGcGGG--CAGCGa-------CG- -5' |
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8075 | 3' | -59.1 | NC_001978.2 | + | 2706 | 0.67 | 0.427594 |
Target: 5'- uGGUGCUCGcCGUUCa--CGgCGCUGUg -3' miRNA: 3'- -CCACGAGCaGCAGGcggGCaGCGACG- -5' |
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8075 | 3' | -59.1 | NC_001978.2 | + | 12695 | 0.67 | 0.427594 |
Target: 5'- cGUGC-CGUCcUUCGCCUGUaCGUucUGCg -3' miRNA: 3'- cCACGaGCAGcAGGCGGGCA-GCG--ACG- -5' |
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8075 | 3' | -59.1 | NC_001978.2 | + | 18817 | 0.67 | 0.418283 |
Target: 5'- gGGUGCgcgCGgCGUUC-CCCGcuaucgaCGCUGCg -3' miRNA: 3'- -CCACGa--GCaGCAGGcGGGCa------GCGACG- -5' |
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8075 | 3' | -59.1 | NC_001978.2 | + | 20894 | 0.67 | 0.418283 |
Target: 5'- -aUGCUCGcgUCGUCCuucaGUCCGUCGa-GCu -3' miRNA: 3'- ccACGAGC--AGCAGG----CGGGCAGCgaCG- -5' |
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8075 | 3' | -59.1 | NC_001978.2 | + | 32243 | 0.67 | 0.418283 |
Target: 5'- cGGUGCgcgCGUccgucgauaccCGUCCGCCCcgGUCgGCUu- -3' miRNA: 3'- -CCACGa--GCA-----------GCAGGCGGG--CAG-CGAcg -5' |
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8075 | 3' | -59.1 | NC_001978.2 | + | 37516 | 0.67 | 0.418283 |
Target: 5'- uGUGCgcgagCGUCGUCUGUcuUCGUCgGCguagGCg -3' miRNA: 3'- cCACGa----GCAGCAGGCG--GGCAG-CGa---CG- -5' |
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8075 | 3' | -59.1 | NC_001978.2 | + | 26319 | 0.67 | 0.400037 |
Target: 5'- uGUGCUCGcCGguugcCUGCCggaGUCGCgcgGCu -3' miRNA: 3'- cCACGAGCaGCa----GGCGGg--CAGCGa--CG- -5' |
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8075 | 3' | -59.1 | NC_001978.2 | + | 28525 | 0.68 | 0.381435 |
Target: 5'- aGUGCUCccCGUCCGUCCGcugggucagcgucUCGCccaugGCa -3' miRNA: 3'- cCACGAGcaGCAGGCGGGC-------------AGCGa----CG- -5' |
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8075 | 3' | -59.1 | NC_001978.2 | + | 22991 | 0.68 | 0.348452 |
Target: 5'- -uUGCgCGUUGUaCCGCCCGg-GUUGCc -3' miRNA: 3'- ccACGaGCAGCA-GGCGGGCagCGACG- -5' |
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8075 | 3' | -59.1 | NC_001978.2 | + | 22744 | 0.69 | 0.324498 |
Target: 5'- cGUGUUCGUCG-CUGCC-GUCGUcggGCu -3' miRNA: 3'- cCACGAGCAGCaGGCGGgCAGCGa--CG- -5' |
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8075 | 3' | -59.1 | NC_001978.2 | + | 24319 | 0.69 | 0.309221 |
Target: 5'- --aGC-CGUucUGUUCGCCCGUCacauuGCUGCg -3' miRNA: 3'- ccaCGaGCA--GCAGGCGGGCAG-----CGACG- -5' |
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8075 | 3' | -59.1 | NC_001978.2 | + | 30975 | 0.69 | 0.301791 |
Target: 5'- --aGCUCaaGUCGUaCCGCCCGaaggCGCguaagGCg -3' miRNA: 3'- ccaCGAG--CAGCA-GGCGGGCa---GCGa----CG- -5' |
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8075 | 3' | -59.1 | NC_001978.2 | + | 25507 | 0.7 | 0.280329 |
Target: 5'- cGUGUcgaCGUCGUUCGCCCGguuccCGC-GCa -3' miRNA: 3'- cCACGa--GCAGCAGGCGGGCa----GCGaCG- -5' |
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8075 | 3' | -59.1 | NC_001978.2 | + | 18360 | 0.71 | 0.234994 |
Target: 5'- cGUGCguaGUUG-CCGCCCGgcUUGCUGUg -3' miRNA: 3'- cCACGag-CAGCaGGCGGGC--AGCGACG- -5' |
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8075 | 3' | -59.1 | NC_001978.2 | + | 4685 | 0.96 | 0.003684 |
Target: 5'- gGGUcgUCGUCGUCCGCCCGUCGCUGCc -3' miRNA: 3'- -CCAcgAGCAGCAGGCGGGCAGCGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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