miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8075 5' -53.9 NC_001978.2 + 741 0.72 0.368277
Target:  5'- uGGCguagGCGCcGAAGGUGAAGccGACGAGCc -3'
miRNA:   3'- cUCG----UGCGcCUUCCACUUC--CUGCUUG- -5'
8075 5' -53.9 NC_001978.2 + 33490 0.66 0.6988
Target:  5'- uGGCGCGC-GAAGGUGcGGuauGCGGACc -3'
miRNA:   3'- cUCGUGCGcCUUCCACuUCc--UGCUUG- -5'
8075 5' -53.9 NC_001978.2 + 18146 0.66 0.6988
Target:  5'- uGGGaCGCGCuGAAGGUcccGAAGGucUGAGCg -3'
miRNA:   3'- -CUC-GUGCGcCUUCCA---CUUCCu-GCUUG- -5'
8075 5' -53.9 NC_001978.2 + 15746 0.66 0.68757
Target:  5'- cGGGCgGCGUGuggucGAAGGUGucGGACGGc- -3'
miRNA:   3'- -CUCG-UGCGC-----CUUCCACuuCCUGCUug -5'
8075 5' -53.9 NC_001978.2 + 31504 0.67 0.630808
Target:  5'- gGGGCACGaCGuGAAGGUGuggcgcguAGGACa--- -3'
miRNA:   3'- -CUCGUGC-GC-CUUCCACu-------UCCUGcuug -5'
8075 5' -53.9 NC_001978.2 + 33919 0.67 0.619414
Target:  5'- gGAGCAuCGgGGGAGGcGAccGGCGAAg -3'
miRNA:   3'- -CUCGU-GCgCCUUCCaCUucCUGCUUg -5'
8075 5' -53.9 NC_001978.2 + 21199 0.68 0.585345
Target:  5'- cGAGaa-GCGGAAGGcGAAGG-CGGAg -3'
miRNA:   3'- -CUCgugCGCCUUCCaCUUCCuGCUUg -5'
8075 5' -53.9 NC_001978.2 + 22559 0.68 0.574059
Target:  5'- cGGCuCGCGGAAGGUGAucGGuaagccggucgcACGGAa -3'
miRNA:   3'- cUCGuGCGCCUUCCACUu-CC------------UGCUUg -5'
8075 5' -53.9 NC_001978.2 + 25804 0.69 0.507712
Target:  5'- gGAGCugGCcGAAGGUcuGAAGGGCu--- -3'
miRNA:   3'- -CUCGugCGcCUUCCA--CUUCCUGcuug -5'
8075 5' -53.9 NC_001978.2 + 28945 0.7 0.44483
Target:  5'- aAGCGCGacCGGAAGGUGuucAAGGGCGc-- -3'
miRNA:   3'- cUCGUGC--GCCUUCCAC---UUCCUGCuug -5'
8075 5' -53.9 NC_001978.2 + 5759 0.71 0.395913
Target:  5'- cGGCucagAUGCGGAAGcUGAAGGacGCGAACg -3'
miRNA:   3'- cUCG----UGCGCCUUCcACUUCC--UGCUUG- -5'
8075 5' -53.9 NC_001978.2 + 32858 0.66 0.676284
Target:  5'- -cGCACaaGGAAGGUGAccGACGcAUg -3'
miRNA:   3'- cuCGUGcgCCUUCCACUucCUGCuUG- -5'
8075 5' -53.9 NC_001978.2 + 35569 0.73 0.317093
Target:  5'- cGGCGCGuUGGggGacGUGAAGG-CGAGCg -3'
miRNA:   3'- cUCGUGC-GCCuuC--CACUUCCuGCUUG- -5'
8075 5' -53.9 NC_001978.2 + 4651 1.09 0.000907
Target:  5'- cGAGCACGCGGAAGGUGAAGGACGAACc -3'
miRNA:   3'- -CUCGUGCGCCUUCCACUUCCUGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.