miRNA display CGI


Results 41 - 59 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8076 3' -57.5 NC_001978.2 + 28190 0.7 0.319643
Target:  5'- -aCGGCGCGCCugaacCCGUGCcuUGA-CGCc -3'
miRNA:   3'- caGCUGCGCGGu----GGCGCGu-ACUaGCG- -5'
8076 3' -57.5 NC_001978.2 + 17248 0.7 0.296755
Target:  5'- aGUCGGCGCaCUAcCCGCGCAcGGcuUCGUg -3'
miRNA:   3'- -CAGCUGCGcGGU-GGCGCGUaCU--AGCG- -5'
8076 3' -57.5 NC_001978.2 + 25719 0.71 0.254844
Target:  5'- -gCGACGCGCuCACUGCcGUAUcGGUCGg -3'
miRNA:   3'- caGCUGCGCG-GUGGCG-CGUA-CUAGCg -5'
8076 3' -57.5 NC_001978.2 + 6749 0.72 0.217914
Target:  5'- gGUCGACGCugaGCgCGCCGUGUAUGGcauUCGg -3'
miRNA:   3'- -CAGCUGCG---CG-GUGGCGCGUACU---AGCg -5'
8076 3' -57.5 NC_001978.2 + 32189 0.68 0.423995
Target:  5'- --gGACGCGCgCACCGCuGaggGAUgGCg -3'
miRNA:   3'- cagCUGCGCG-GUGGCG-CguaCUAgCG- -5'
8076 3' -57.5 NC_001978.2 + 35595 0.67 0.443274
Target:  5'- cGUCGGCGCGaCCgaagaccccgggACCGUGCccacaAUCGCc -3'
miRNA:   3'- -CAGCUGCGC-GG------------UGGCGCGuac--UAGCG- -5'
8076 3' -57.5 NC_001978.2 + 28833 0.66 0.524884
Target:  5'- uGUUGGCaGCGCuCGCCGa-CGUGAagCGCa -3'
miRNA:   3'- -CAGCUG-CGCG-GUGGCgcGUACUa-GCG- -5'
8076 3' -57.5 NC_001978.2 + 27448 0.66 0.514339
Target:  5'- -cUGACGCGCCuGCCGcCGCuaccGGUCccgGCa -3'
miRNA:   3'- caGCUGCGCGG-UGGC-GCGua--CUAG---CG- -5'
8076 3' -57.5 NC_001978.2 + 21237 0.66 0.513289
Target:  5'- uUCG-CGCuGCCGCCGaCGCGuucgaccuugaccUGAgCGCg -3'
miRNA:   3'- cAGCuGCG-CGGUGGC-GCGU-------------ACUaGCG- -5'
8076 3' -57.5 NC_001978.2 + 35329 0.66 0.503882
Target:  5'- -gCGACgGCGCUugU-UGCGUGAUCGUu -3'
miRNA:   3'- caGCUG-CGCGGugGcGCGUACUAGCG- -5'
8076 3' -57.5 NC_001978.2 + 16675 0.66 0.503882
Target:  5'- -cCGGCGCGCuUGCCGCuaugcggucaacGCAUGucggCGCc -3'
miRNA:   3'- caGCUGCGCG-GUGGCG------------CGUACua--GCG- -5'
8076 3' -57.5 NC_001978.2 + 27051 0.66 0.503882
Target:  5'- uUCG-UGCGCUACuuCGCGCcgGAagagCGCg -3'
miRNA:   3'- cAGCuGCGCGGUG--GCGCGuaCUa---GCG- -5'
8076 3' -57.5 NC_001978.2 + 26431 0.67 0.463036
Target:  5'- uUCGACGCGaa--CGCGCAccuguUGAgcuUCGCg -3'
miRNA:   3'- cAGCUGCGCggugGCGCGU-----ACU---AGCG- -5'
8076 3' -57.5 NC_001978.2 + 22735 0.67 0.463036
Target:  5'- cGUCGGCGUcguguucgucGCUGCCGuCGUcgGGcUCGCc -3'
miRNA:   3'- -CAGCUGCG----------CGGUGGC-GCGuaCU-AGCG- -5'
8076 3' -57.5 NC_001978.2 + 37398 0.67 0.453096
Target:  5'- aUCGAUaGCGCCGCUGagGCAcUGAcCGCc -3'
miRNA:   3'- cAGCUG-CGCGGUGGCg-CGU-ACUaGCG- -5'
8076 3' -57.5 NC_001978.2 + 7661 0.67 0.453096
Target:  5'- uUCGuaACGCGCUGCCGaCGUAcGAagGCa -3'
miRNA:   3'- cAGC--UGCGCGGUGGC-GCGUaCUagCG- -5'
8076 3' -57.5 NC_001978.2 + 1842 0.67 0.453096
Target:  5'- uUCGACGCGCUgacGCUGgGCAgugcCGCc -3'
miRNA:   3'- cAGCUGCGCGG---UGGCgCGUacuaGCG- -5'
8076 3' -57.5 NC_001978.2 + 25913 0.67 0.443274
Target:  5'- aUCGACGCGUa--CGCGC-UGAaCGUg -3'
miRNA:   3'- cAGCUGCGCGgugGCGCGuACUaGCG- -5'
8076 3' -57.5 NC_001978.2 + 25509 0.8 0.069484
Target:  5'- uGUCGACGUcguucGCCcgguucCCGCGCAUGGUCGUu -3'
miRNA:   3'- -CAGCUGCG-----CGGu-----GGCGCGUACUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.