miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8076 3' -57.5 NC_001978.2 + 26431 0.67 0.463036
Target:  5'- uUCGACGCGaa--CGCGCAccuguUGAgcuUCGCg -3'
miRNA:   3'- cAGCUGCGCggugGCGCGU-----ACU---AGCG- -5'
8076 3' -57.5 NC_001978.2 + 9960 0.67 0.453096
Target:  5'- aGUCGACcaacccaGUCugaagACCGCGCGUGAaCGCc -3'
miRNA:   3'- -CAGCUGcg-----CGG-----UGGCGCGUACUaGCG- -5'
8076 3' -57.5 NC_001978.2 + 37398 0.67 0.453096
Target:  5'- aUCGAUaGCGCCGCUGagGCAcUGAcCGCc -3'
miRNA:   3'- cAGCUG-CGCGGUGGCg-CGU-ACUaGCG- -5'
8076 3' -57.5 NC_001978.2 + 7661 0.67 0.453096
Target:  5'- uUCGuaACGCGCUGCCGaCGUAcGAagGCa -3'
miRNA:   3'- cAGC--UGCGCGGUGGC-GCGUaCUagCG- -5'
8076 3' -57.5 NC_001978.2 + 1842 0.67 0.453096
Target:  5'- uUCGACGCGCUgacGCUGgGCAgugcCGCc -3'
miRNA:   3'- cAGCUGCGCGG---UGGCgCGUacuaGCG- -5'
8076 3' -57.5 NC_001978.2 + 34327 0.67 0.452109
Target:  5'- -gCGugGCuccggcaagcuccGCCgACgGCGCAUGAcguaUCGCg -3'
miRNA:   3'- caGCugCG-------------CGG-UGgCGCGUACU----AGCG- -5'
8076 3' -57.5 NC_001978.2 + 35595 0.67 0.443274
Target:  5'- cGUCGGCGCGaCCgaagaccccgggACCGUGCccacaAUCGCc -3'
miRNA:   3'- -CAGCUGCGC-GG------------UGGCGCGuac--UAGCG- -5'
8076 3' -57.5 NC_001978.2 + 25913 0.67 0.443274
Target:  5'- aUCGACGCGUa--CGCGC-UGAaCGUg -3'
miRNA:   3'- cAGCUGCGCGgugGCGCGuACUaGCG- -5'
8076 3' -57.5 NC_001978.2 + 4970 0.67 0.443274
Target:  5'- cUCG-CGCGCCucaaaguUgGCGCucagaGUGGUCGCg -3'
miRNA:   3'- cAGCuGCGCGGu------GgCGCG-----UACUAGCG- -5'
8076 3' -57.5 NC_001978.2 + 19931 0.68 0.433572
Target:  5'- cGUCGGCccccggcacgGCGCCAauGCGCAc-GUCGCc -3'
miRNA:   3'- -CAGCUG----------CGCGGUggCGCGUacUAGCG- -5'
8076 3' -57.5 NC_001978.2 + 32189 0.68 0.423995
Target:  5'- --gGACGCGCgCACCGCuGaggGAUgGCg -3'
miRNA:   3'- cagCUGCGCG-GUGGCG-CguaCUAgCG- -5'
8076 3' -57.5 NC_001978.2 + 38632 0.68 0.423995
Target:  5'- -cCGACGUGCC-CgGCGCu---UCGCu -3'
miRNA:   3'- caGCUGCGCGGuGgCGCGuacuAGCG- -5'
8076 3' -57.5 NC_001978.2 + 12319 0.68 0.414545
Target:  5'- -cCGACGuCGUCAgCCGCGCAacGAUCa- -3'
miRNA:   3'- caGCUGC-GCGGU-GGCGCGUa-CUAGcg -5'
8076 3' -57.5 NC_001978.2 + 22696 0.68 0.414545
Target:  5'- aGUCGGCaaccCGCUACCGgGCGc-GUCGCu -3'
miRNA:   3'- -CAGCUGc---GCGGUGGCgCGUacUAGCG- -5'
8076 3' -57.5 NC_001978.2 + 37865 0.68 0.405227
Target:  5'- uGUCGGCggggGCGCCGucccguacaacgUCGCGCGUGAgCGg -3'
miRNA:   3'- -CAGCUG----CGCGGU------------GGCGCGUACUaGCg -5'
8076 3' -57.5 NC_001978.2 + 33539 0.68 0.405227
Target:  5'- cGUUGcCGCuGCCAUUGCGgGUG-UCGCc -3'
miRNA:   3'- -CAGCuGCG-CGGUGGCGCgUACuAGCG- -5'
8076 3' -57.5 NC_001978.2 + 24569 0.68 0.396041
Target:  5'- -cCGACGCGCC-CCGgGuUAUGGcgUUGCu -3'
miRNA:   3'- caGCUGCGCGGuGGCgC-GUACU--AGCG- -5'
8076 3' -57.5 NC_001978.2 + 24490 0.68 0.39513
Target:  5'- cUCGACGCGCUgagcaacgccauaACCcgggGCGCGUcGGUUGUg -3'
miRNA:   3'- cAGCUGCGCGG-------------UGG----CGCGUA-CUAGCG- -5'
8076 3' -57.5 NC_001978.2 + 17530 0.68 0.386991
Target:  5'- -cCGACGCGCaCGCuUGCGCA-GAUacaCGCc -3'
miRNA:   3'- caGCUGCGCG-GUG-GCGCGUaCUA---GCG- -5'
8076 3' -57.5 NC_001978.2 + 19718 0.68 0.386991
Target:  5'- uGUCGAagGCGUCcUUGCGCG-GGUCGCu -3'
miRNA:   3'- -CAGCUg-CGCGGuGGCGCGUaCUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.