Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8076 | 5' | -56.2 | NC_001978.2 | + | 5335 | 1.08 | 0.000631 |
Target: 5'- uCGACAGCCUGAGCGAUGAGCUGACCGu -3' miRNA: 3'- -GCUGUCGGACUCGCUACUCGACUGGC- -5' |
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8076 | 5' | -56.2 | NC_001978.2 | + | 7554 | 0.75 | 0.173412 |
Target: 5'- gGGCAGCgUGGucgaguucgacGCGAcgucgcuUGAGCUGACCGg -3' miRNA: 3'- gCUGUCGgACU-----------CGCU-------ACUCGACUGGC- -5' |
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8076 | 5' | -56.2 | NC_001978.2 | + | 9272 | 0.73 | 0.222065 |
Target: 5'- gCGACGGuCCUGGGCGAcGAaGUUgGGCCGa -3' miRNA: 3'- -GCUGUC-GGACUCGCUaCU-CGA-CUGGC- -5' |
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8076 | 5' | -56.2 | NC_001978.2 | + | 25869 | 0.73 | 0.228069 |
Target: 5'- uCGGCuucacgcugcGCCUGAGCGAaGGGCUuGCCGg -3' miRNA: 3'- -GCUGu---------CGGACUCGCUaCUCGAcUGGC- -5' |
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8076 | 5' | -56.2 | NC_001978.2 | + | 28472 | 0.72 | 0.281144 |
Target: 5'- uCGGCAaCCUGGGCGccgGAGUUGACgGa -3' miRNA: 3'- -GCUGUcGGACUCGCua-CUCGACUGgC- -5' |
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8076 | 5' | -56.2 | NC_001978.2 | + | 27114 | 0.71 | 0.295859 |
Target: 5'- uCGGCgggcauuguGGCCUGGGCGGUGcGCgGugCGg -3' miRNA: 3'- -GCUG---------UCGGACUCGCUACuCGaCugGC- -5' |
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8076 | 5' | -56.2 | NC_001978.2 | + | 25498 | 0.68 | 0.454547 |
Target: 5'- gCGccuCAGCCUGGGCGAcgucGAGCccGaACCGg -3' miRNA: 3'- -GCu--GUCGGACUCGCUa---CUCGa-C-UGGC- -5' |
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8076 | 5' | -56.2 | NC_001978.2 | + | 36777 | 0.68 | 0.464653 |
Target: 5'- cCGACgccggAGCCUGAGCcg-GAGCcuGCCGa -3' miRNA: 3'- -GCUG-----UCGGACUCGcuaCUCGacUGGC- -5' |
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8076 | 5' | -56.2 | NC_001978.2 | + | 31304 | 0.68 | 0.464653 |
Target: 5'- cCGAC-GCgCUGAGUGGUGAcgGUgUGGCCGg -3' miRNA: 3'- -GCUGuCG-GACUCGCUACU--CG-ACUGGC- -5' |
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8076 | 5' | -56.2 | NC_001978.2 | + | 19507 | 0.67 | 0.495646 |
Target: 5'- -cACGGCCgGAcguuCGAcacgGAGCUGACCGg -3' miRNA: 3'- gcUGUCGGaCUc---GCUa---CUCGACUGGC- -5' |
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8076 | 5' | -56.2 | NC_001978.2 | + | 35579 | 0.66 | 0.560171 |
Target: 5'- aGACGGCgcccCUGAGCGuc-GGCgcGACCGa -3' miRNA: 3'- gCUGUCG----GACUCGCuacUCGa-CUGGC- -5' |
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8076 | 5' | -56.2 | NC_001978.2 | + | 19980 | 0.66 | 0.571177 |
Target: 5'- gGAcCGGCCgcUGAGCaGAagccggaacuUGAGCUGugCGc -3' miRNA: 3'- gCU-GUCGG--ACUCG-CU----------ACUCGACugGC- -5' |
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8076 | 5' | -56.2 | NC_001978.2 | + | 13811 | 0.66 | 0.582235 |
Target: 5'- gCGACGGCCgGAGCcgcacccGUGGccauuccgacGCUGACCc -3' miRNA: 3'- -GCUGUCGGaCUCGc------UACU----------CGACUGGc -5' |
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8076 | 5' | -56.2 | NC_001978.2 | + | 144 | 0.66 | 0.604468 |
Target: 5'- aGugAGUC-GAGCGAagagcccgGAGCUucgGACCGg -3' miRNA: 3'- gCugUCGGaCUCGCUa-------CUCGA---CUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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