miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8076 5' -56.2 NC_001978.2 + 5335 1.08 0.000631
Target:  5'- uCGACAGCCUGAGCGAUGAGCUGACCGu -3'
miRNA:   3'- -GCUGUCGGACUCGCUACUCGACUGGC- -5'
8076 5' -56.2 NC_001978.2 + 7554 0.75 0.173412
Target:  5'- gGGCAGCgUGGucgaguucgacGCGAcgucgcuUGAGCUGACCGg -3'
miRNA:   3'- gCUGUCGgACU-----------CGCU-------ACUCGACUGGC- -5'
8076 5' -56.2 NC_001978.2 + 9272 0.73 0.222065
Target:  5'- gCGACGGuCCUGGGCGAcGAaGUUgGGCCGa -3'
miRNA:   3'- -GCUGUC-GGACUCGCUaCU-CGA-CUGGC- -5'
8076 5' -56.2 NC_001978.2 + 25869 0.73 0.228069
Target:  5'- uCGGCuucacgcugcGCCUGAGCGAaGGGCUuGCCGg -3'
miRNA:   3'- -GCUGu---------CGGACUCGCUaCUCGAcUGGC- -5'
8076 5' -56.2 NC_001978.2 + 28472 0.72 0.281144
Target:  5'- uCGGCAaCCUGGGCGccgGAGUUGACgGa -3'
miRNA:   3'- -GCUGUcGGACUCGCua-CUCGACUGgC- -5'
8076 5' -56.2 NC_001978.2 + 27114 0.71 0.295859
Target:  5'- uCGGCgggcauuguGGCCUGGGCGGUGcGCgGugCGg -3'
miRNA:   3'- -GCUG---------UCGGACUCGCUACuCGaCugGC- -5'
8076 5' -56.2 NC_001978.2 + 25498 0.68 0.454547
Target:  5'- gCGccuCAGCCUGGGCGAcgucGAGCccGaACCGg -3'
miRNA:   3'- -GCu--GUCGGACUCGCUa---CUCGa-C-UGGC- -5'
8076 5' -56.2 NC_001978.2 + 36777 0.68 0.464653
Target:  5'- cCGACgccggAGCCUGAGCcg-GAGCcuGCCGa -3'
miRNA:   3'- -GCUG-----UCGGACUCGcuaCUCGacUGGC- -5'
8076 5' -56.2 NC_001978.2 + 31304 0.68 0.464653
Target:  5'- cCGAC-GCgCUGAGUGGUGAcgGUgUGGCCGg -3'
miRNA:   3'- -GCUGuCG-GACUCGCUACU--CG-ACUGGC- -5'
8076 5' -56.2 NC_001978.2 + 19507 0.67 0.495646
Target:  5'- -cACGGCCgGAcguuCGAcacgGAGCUGACCGg -3'
miRNA:   3'- gcUGUCGGaCUc---GCUa---CUCGACUGGC- -5'
8076 5' -56.2 NC_001978.2 + 35579 0.66 0.560171
Target:  5'- aGACGGCgcccCUGAGCGuc-GGCgcGACCGa -3'
miRNA:   3'- gCUGUCG----GACUCGCuacUCGa-CUGGC- -5'
8076 5' -56.2 NC_001978.2 + 19980 0.66 0.571177
Target:  5'- gGAcCGGCCgcUGAGCaGAagccggaacuUGAGCUGugCGc -3'
miRNA:   3'- gCU-GUCGG--ACUCG-CU----------ACUCGACugGC- -5'
8076 5' -56.2 NC_001978.2 + 13811 0.66 0.582235
Target:  5'- gCGACGGCCgGAGCcgcacccGUGGccauuccgacGCUGACCc -3'
miRNA:   3'- -GCUGUCGGaCUCGc------UACU----------CGACUGGc -5'
8076 5' -56.2 NC_001978.2 + 144 0.66 0.604468
Target:  5'- aGugAGUC-GAGCGAagagcccgGAGCUucgGACCGg -3'
miRNA:   3'- gCugUCGGaCUCGCUa-------CUCGA---CUGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.