miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8077 3' -50.4 NC_001978.2 + 19794 0.68 0.832419
Target:  5'- gGCUGAGCcauuucggcagucUUCGCGUUGGCguaguCGAGCGc -3'
miRNA:   3'- aCGACUUG-------------AAGCGCAGUUG-----GCUUGCc -5'
8077 3' -50.4 NC_001978.2 + 38520 0.68 0.827709
Target:  5'- cGCUGGGCUugcugcgcucgaaucUCGCGcucgcgCGACUG-ACGGu -3'
miRNA:   3'- aCGACUUGA---------------AGCGCa-----GUUGGCuUGCC- -5'
8077 3' -50.4 NC_001978.2 + 36475 0.68 0.814229
Target:  5'- aGCUGGGCgcguggcccgUCGCGUU--CCGAugGa -3'
miRNA:   3'- aCGACUUGa---------AGCGCAGuuGGCUugCc -5'
8077 3' -50.4 NC_001978.2 + 4786 0.68 0.814229
Target:  5'- cGaCUGAAgagCGCGauuccCAGCCGGACGGc -3'
miRNA:   3'- aC-GACUUgaaGCGCa----GUUGGCUUGCC- -5'
8077 3' -50.4 NC_001978.2 + 30737 0.68 0.814229
Target:  5'- cGCcGug--UCGaCGUCGACCGAAgGGg -3'
miRNA:   3'- aCGaCuugaAGC-GCAGUUGGCUUgCC- -5'
8077 3' -50.4 NC_001978.2 + 32225 0.68 0.793251
Target:  5'- gGCUGAGCggcagcgcgccaUUCGCGaagcgcucaacgUCGACCGGgucacgacgcccaGCGGa -3'
miRNA:   3'- aCGACUUG------------AAGCGC------------AGUUGGCU-------------UGCC- -5'
8077 3' -50.4 NC_001978.2 + 13257 0.69 0.784006
Target:  5'- cGCUGAACgcgucCGgGUgGcacagcuauuacGCCGGGCGGg -3'
miRNA:   3'- aCGACUUGaa---GCgCAgU------------UGGCUUGCC- -5'
8077 3' -50.4 NC_001978.2 + 7368 0.69 0.773571
Target:  5'- -cCUGggUUgCGUGgCGACCGAAUGGa -3'
miRNA:   3'- acGACuuGAaGCGCaGUUGGCUUGCC- -5'
8077 3' -50.4 NC_001978.2 + 3988 0.69 0.773571
Target:  5'- gGUUGAACUUCacgaaccugaaGCgGUCGGCCGucuCGGc -3'
miRNA:   3'- aCGACUUGAAG-----------CG-CAGUUGGCuu-GCC- -5'
8077 3' -50.4 NC_001978.2 + 38930 0.69 0.752233
Target:  5'- cGCUGAAgguuCUUCGUGUCGagaaucuucGCCGAcuucaGCGa -3'
miRNA:   3'- aCGACUU----GAAGCGCAGU---------UGGCU-----UGCc -5'
8077 3' -50.4 NC_001978.2 + 11414 0.7 0.708061
Target:  5'- ---cGGGCgcaGCGUcCGACCGAACGGc -3'
miRNA:   3'- acgaCUUGaagCGCA-GUUGGCUUGCC- -5'
8077 3' -50.4 NC_001978.2 + 8195 0.71 0.651107
Target:  5'- uUGCUcGACUUCGgGUCGcggugACCGucCGGg -3'
miRNA:   3'- -ACGAcUUGAAGCgCAGU-----UGGCuuGCC- -5'
8077 3' -50.4 NC_001978.2 + 28017 0.72 0.605121
Target:  5'- cGCcuuaauCUUCGUGUCGACCGugcGCGGu -3'
miRNA:   3'- aCGacuu--GAAGCGCAGUUGGCu--UGCC- -5'
8077 3' -50.4 NC_001978.2 + 20483 0.72 0.605121
Target:  5'- cGUUGAAguCUUCGgcgaCGUCGGCCGAcCGGc -3'
miRNA:   3'- aCGACUU--GAAGC----GCAGUUGGCUuGCC- -5'
8077 3' -50.4 NC_001978.2 + 16314 0.72 0.570859
Target:  5'- aGCgUGAccgucggacccgGCUUCGUGUUGACCGAcgucACGGc -3'
miRNA:   3'- aCG-ACU------------UGAAGCGCAGUUGGCU----UGCC- -5'
8077 3' -50.4 NC_001978.2 + 4939 0.72 0.570859
Target:  5'- cGCUGAGCUUCG-GUC--CCuGACGGa -3'
miRNA:   3'- aCGACUUGAAGCgCAGuuGGcUUGCC- -5'
8077 3' -50.4 NC_001978.2 + 16411 0.74 0.461401
Target:  5'- cGCUGGGCUUCGaagcgugGUCGGucuacCCGGGCGGc -3'
miRNA:   3'- aCGACUUGAAGCg------CAGUU-----GGCUUGCC- -5'
8077 3' -50.4 NC_001978.2 + 27978 0.75 0.420753
Target:  5'- cGCUGAuugaccCGCGUCAGCCccaGGACGGc -3'
miRNA:   3'- aCGACUugaa--GCGCAGUUGG---CUUGCC- -5'
8077 3' -50.4 NC_001978.2 + 26449 0.75 0.401256
Target:  5'- cUGUUGAGCUUCGCGaacggcguggUCGACCuucguACGGg -3'
miRNA:   3'- -ACGACUUGAAGCGC----------AGUUGGcu---UGCC- -5'
8077 3' -50.4 NC_001978.2 + 32352 0.76 0.391726
Target:  5'- cGCUGAA----GCGUCcGCCGAACGGc -3'
miRNA:   3'- aCGACUUgaagCGCAGuUGGCUUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.