miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8077 5' -57.7 NC_001978.2 + 27289 0.66 0.474903
Target:  5'- cGgGAagaaACCGGCG-AGCGcAucggacgucGCCCGGUAc -3'
miRNA:   3'- uCgCU----UGGCCGCuUCGC-U---------UGGGCCAU- -5'
8077 5' -57.7 NC_001978.2 + 8580 0.66 0.489287
Target:  5'- cGCGAACCGGCcuuguucagggaucGAGCGGcugACCCGuGa- -3'
miRNA:   3'- uCGCUUGGCCGc-------------UUCGCU---UGGGC-Cau -5'
8077 5' -57.7 NC_001978.2 + 1953 0.66 0.516519
Target:  5'- gAGCGGGucaacuCCGGUGAGGCuGAcgACCCGa-- -3'
miRNA:   3'- -UCGCUU------GGCCGCUUCG-CU--UGGGCcau -5'
8077 5' -57.7 NC_001978.2 + 33495 0.66 0.495513
Target:  5'- cGCGAAgguGCGGuauGCGGACCCGGa- -3'
miRNA:   3'- uCGCUUggcCGCUu--CGCUUGGGCCau -5'
8077 5' -57.7 NC_001978.2 + 35041 0.66 0.505969
Target:  5'- uGCGGcauuacucgacACCccccagGGCGAAGCGGAUUgGGUAg -3'
miRNA:   3'- uCGCU-----------UGG------CCGCUUCGCUUGGgCCAU- -5'
8077 5' -57.7 NC_001978.2 + 30008 0.66 0.51546
Target:  5'- cGGCGGACUgGGCGgcGCGAAUCgucucaaUGGUc -3'
miRNA:   3'- -UCGCUUGG-CCGCuuCGCUUGG-------GCCAu -5'
8077 5' -57.7 NC_001978.2 + 17581 0.66 0.516519
Target:  5'- aGGCG-ACCGGCGAcguuGGCGAcguuggcgGCUCGa-- -3'
miRNA:   3'- -UCGCuUGGCCGCU----UCGCU--------UGGGCcau -5'
8077 5' -57.7 NC_001978.2 + 4167 0.66 0.46476
Target:  5'- cGGCGGaagaGCCGGaCGAAGagcCGGAgCCGGa- -3'
miRNA:   3'- -UCGCU----UGGCC-GCUUC---GCUUgGGCCau -5'
8077 5' -57.7 NC_001978.2 + 40208 0.66 0.495513
Target:  5'- aAGaCGuAgCGGCGuAGCGAgacACCCGGg- -3'
miRNA:   3'- -UC-GCuUgGCCGCuUCGCU---UGGGCCau -5'
8077 5' -57.7 NC_001978.2 + 25959 0.66 0.46476
Target:  5'- ---uGACUGGCGuGAGCGcGACCCGGg- -3'
miRNA:   3'- ucgcUUGGCCGC-UUCGC-UUGGGCCau -5'
8077 5' -57.7 NC_001978.2 + 1661 0.67 0.425368
Target:  5'- cGCGAAgcaaaUGGUGAAcGCGAGCCCGa-- -3'
miRNA:   3'- uCGCUUg----GCCGCUU-CGCUUGGGCcau -5'
8077 5' -57.7 NC_001978.2 + 8969 0.67 0.425368
Target:  5'- cGGCGAACaGGCGAGGgGcuuGCCCuugcugcgGGUGg -3'
miRNA:   3'- -UCGCUUGgCCGCUUCgCu--UGGG--------CCAU- -5'
8077 5' -57.7 NC_001978.2 + 4105 0.67 0.406431
Target:  5'- gGGCGAAgUCGGCGAAGagccgGAGCCUGa-- -3'
miRNA:   3'- -UCGCUU-GGCCGCUUCg----CUUGGGCcau -5'
8077 5' -57.7 NC_001978.2 + 9118 0.67 0.406431
Target:  5'- gGGUGAagccGCCGGUGAAGUGuauucGgCCGGUu -3'
miRNA:   3'- -UCGCU----UGGCCGCUUCGCu----UgGGCCAu -5'
8077 5' -57.7 NC_001978.2 + 19127 0.67 0.443835
Target:  5'- cGCGAGCgCGGCaacaGGAGUGAgucaacgAUCCGGUu -3'
miRNA:   3'- uCGCUUG-GCCG----CUUCGCU-------UGGGCCAu -5'
8077 5' -57.7 NC_001978.2 + 36867 0.67 0.45473
Target:  5'- uGGCGucACCGGC----UGAACCCGGUu -3'
miRNA:   3'- -UCGCu-UGGCCGcuucGCUUGGGCCAu -5'
8077 5' -57.7 NC_001978.2 + 17633 0.67 0.45473
Target:  5'- cGCuGAGCCGucCGGAGCcgucGCCCGGUAc -3'
miRNA:   3'- uCG-CUUGGCc-GCUUCGcu--UGGGCCAU- -5'
8077 5' -57.7 NC_001978.2 + 8086 0.68 0.379042
Target:  5'- cGGCGAAguucugauuccCCaGGCGAAGCacGAaaGCCCGGa- -3'
miRNA:   3'- -UCGCUU-----------GG-CCGCUUCG--CU--UGGGCCau -5'
8077 5' -57.7 NC_001978.2 + 8811 0.68 0.361483
Target:  5'- aAGCGcGCCGGUcgGggGCGAAgCgGGg- -3'
miRNA:   3'- -UCGCuUGGCCG--CuuCGCUUgGgCCau -5'
8077 5' -57.7 NC_001978.2 + 38590 0.68 0.361483
Target:  5'- cGGCGuucgggaCGGCGGAGC--GCCCGGa- -3'
miRNA:   3'- -UCGCuug----GCCGCUUCGcuUGGGCCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.