miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8077 5' -57.7 NC_001978.2 + 17633 0.67 0.45473
Target:  5'- cGCuGAGCCGucCGGAGCcgucGCCCGGUAc -3'
miRNA:   3'- uCG-CUUGGCc-GCUUCGcu--UGGGCCAU- -5'
8077 5' -57.7 NC_001978.2 + 38590 0.68 0.361483
Target:  5'- cGGCGuucgggaCGGCGGAGC--GCCCGGa- -3'
miRNA:   3'- -UCGCuug----GCCGCUUCGcuUGGGCCau -5'
8077 5' -57.7 NC_001978.2 + 8811 0.68 0.361483
Target:  5'- aAGCGcGCCGGUcgGggGCGAAgCgGGg- -3'
miRNA:   3'- -UCGCuUGGCCG--CuuCGCUUgGgCCau -5'
8077 5' -57.7 NC_001978.2 + 8086 0.68 0.379042
Target:  5'- cGGCGAAguucugauuccCCaGGCGAAGCacGAaaGCCCGGa- -3'
miRNA:   3'- -UCGCUU-----------GG-CCGCUUCG--CU--UGGGCCau -5'
8077 5' -57.7 NC_001978.2 + 27106 0.68 0.387128
Target:  5'- gGGCGGAgUCGGCGGgcauuguggccugGGCGGugCgCGGUGc -3'
miRNA:   3'- -UCGCUU-GGCCGCU-------------UCGCUugG-GCCAU- -5'
8077 5' -57.7 NC_001978.2 + 9118 0.67 0.406431
Target:  5'- gGGUGAagccGCCGGUGAAGUGuauucGgCCGGUu -3'
miRNA:   3'- -UCGCU----UGGCCGCUUCGCu----UgGGCCAu -5'
8077 5' -57.7 NC_001978.2 + 4105 0.67 0.406431
Target:  5'- gGGCGAAgUCGGCGAAGagccgGAGCCUGa-- -3'
miRNA:   3'- -UCGCUU-GGCCGCUUCg----CUUGGGCcau -5'
8077 5' -57.7 NC_001978.2 + 8969 0.67 0.425368
Target:  5'- cGGCGAACaGGCGAGGgGcuuGCCCuugcugcgGGUGg -3'
miRNA:   3'- -UCGCUUGgCCGCUUCgCu--UGGG--------CCAU- -5'
8077 5' -57.7 NC_001978.2 + 1661 0.67 0.425368
Target:  5'- cGCGAAgcaaaUGGUGAAcGCGAGCCCGa-- -3'
miRNA:   3'- uCGCUUg----GCCGCUU-CGCUUGGGCcau -5'
8077 5' -57.7 NC_001978.2 + 36252 0.69 0.328094
Target:  5'- gAGuUGGGCacgaaGGCGAuuguGCGAACCCGGc- -3'
miRNA:   3'- -UC-GCUUGg----CCGCUu---CGCUUGGGCCau -5'
8077 5' -57.7 NC_001978.2 + 23501 0.7 0.288913
Target:  5'- gAGCGGAaggcagCGGCGAAGgaguacgacgcgcCGAACCCGGc- -3'
miRNA:   3'- -UCGCUUg-----GCCGCUUC-------------GCUUGGGCCau -5'
8077 5' -57.7 NC_001978.2 + 33932 0.7 0.27109
Target:  5'- aGGCG-ACCGGCGAAGagaucacggcgcuucUGAACCgGGg- -3'
miRNA:   3'- -UCGCuUGGCCGCUUC---------------GCUUGGgCCau -5'
8077 5' -57.7 NC_001978.2 + 22605 0.74 0.166034
Target:  5'- gGGCGcaugguGACCGGCacucAGCGAcgcGCCCGGUAg -3'
miRNA:   3'- -UCGC------UUGGCCGcu--UCGCU---UGGGCCAU- -5'
8077 5' -57.7 NC_001978.2 + 20904 0.72 0.195527
Target:  5'- cGCuacGGCCGGaCGGAGCuuGCCCGGUAc -3'
miRNA:   3'- uCGc--UUGGCC-GCUUCGcuUGGGCCAU- -5'
8077 5' -57.7 NC_001978.2 + 987 0.72 0.211927
Target:  5'- cGGCGGgaguCUGGCgGggGCGAcgACCCGGa- -3'
miRNA:   3'- -UCGCUu---GGCCG-CuuCGCU--UGGGCCau -5'
8077 5' -57.7 NC_001978.2 + 36689 0.71 0.228893
Target:  5'- cGCGGaaccugagccgguACCGGCGGAGCcuGAGCCCGu-- -3'
miRNA:   3'- uCGCU-------------UGGCCGCUUCG--CUUGGGCcau -5'
8077 5' -57.7 NC_001978.2 + 11644 0.71 0.235622
Target:  5'- gGGCagGGACCGGCGccGGaCG-ACCCGGUAa -3'
miRNA:   3'- -UCG--CUUGGCCGCu-UC-GCuUGGGCCAU- -5'
8077 5' -57.7 NC_001978.2 + 16423 0.71 0.252845
Target:  5'- aAGCGuggucggucuacccGGgCGGCGuGGUGAACCCGGUu -3'
miRNA:   3'- -UCGC--------------UUgGCCGCuUCGCUUGGGCCAu -5'
8077 5' -57.7 NC_001978.2 + 38049 0.71 0.254821
Target:  5'- cGGCGAGCCGGUGAcgcucgaauGGCGuuCgCGGUc -3'
miRNA:   3'- -UCGCUUGGCCGCU---------UCGCuuGgGCCAu -5'
8077 5' -57.7 NC_001978.2 + 32712 0.71 0.2615
Target:  5'- gAGCGcaagaauCCGGCGAcGGCuucGAACCCGGg- -3'
miRNA:   3'- -UCGCuu-----GGCCGCU-UCG---CUUGGGCCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.