Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8077 | 5' | -57.7 | NC_001978.2 | + | 8811 | 0.68 | 0.361483 |
Target: 5'- aAGCGcGCCGGUcgGggGCGAAgCgGGg- -3' miRNA: 3'- -UCGCuUGGCCG--CuuCGCUUgGgCCau -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 38590 | 0.68 | 0.361483 |
Target: 5'- cGGCGuucgggaCGGCGGAGC--GCCCGGa- -3' miRNA: 3'- -UCGCuug----GCCGCUUCGcuUGGGCCau -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 36252 | 0.69 | 0.328094 |
Target: 5'- gAGuUGGGCacgaaGGCGAuuguGCGAACCCGGc- -3' miRNA: 3'- -UC-GCUUGg----CCGCUu---CGCUUGGGCCau -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 23501 | 0.7 | 0.288913 |
Target: 5'- gAGCGGAaggcagCGGCGAAGgaguacgacgcgcCGAACCCGGc- -3' miRNA: 3'- -UCGCUUg-----GCCGCUUC-------------GCUUGGGCCau -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 33932 | 0.7 | 0.27109 |
Target: 5'- aGGCG-ACCGGCGAAGagaucacggcgcuucUGAACCgGGg- -3' miRNA: 3'- -UCGCuUGGCCGCUUC---------------GCUUGGgCCau -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 32712 | 0.71 | 0.2615 |
Target: 5'- gAGCGcaagaauCCGGCGAcGGCuucGAACCCGGg- -3' miRNA: 3'- -UCGCuu-----GGCCGCU-UCG---CUUGGGCCau -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 38049 | 0.71 | 0.254821 |
Target: 5'- cGGCGAGCCGGUGAcgcucgaauGGCGuuCgCGGUc -3' miRNA: 3'- -UCGCUUGGCCGCU---------UCGCuuGgGCCAu -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 16423 | 0.71 | 0.252845 |
Target: 5'- aAGCGuggucggucuacccGGgCGGCGuGGUGAACCCGGUu -3' miRNA: 3'- -UCGC--------------UUgGCCGCuUCGCUUGGGCCAu -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 11644 | 0.71 | 0.235622 |
Target: 5'- gGGCagGGACCGGCGccGGaCG-ACCCGGUAa -3' miRNA: 3'- -UCG--CUUGGCCGCu-UC-GCuUGGGCCAU- -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 36689 | 0.71 | 0.228893 |
Target: 5'- cGCGGaaccugagccgguACCGGCGGAGCcuGAGCCCGu-- -3' miRNA: 3'- uCGCU-------------UGGCCGCUUCG--CUUGGGCcau -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 987 | 0.72 | 0.211927 |
Target: 5'- cGGCGGgaguCUGGCgGggGCGAcgACCCGGa- -3' miRNA: 3'- -UCGCUu---GGCCG-CuuCGCU--UGGGCCau -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 20904 | 0.72 | 0.195527 |
Target: 5'- cGCuacGGCCGGaCGGAGCuuGCCCGGUAc -3' miRNA: 3'- uCGc--UUGGCC-GCUUCGcuUGGGCCAU- -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 22605 | 0.74 | 0.166034 |
Target: 5'- gGGCGcaugguGACCGGCacucAGCGAcgcGCCCGGUAg -3' miRNA: 3'- -UCGC------UUGGCCGcu--UCGCU---UGGGCCAU- -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 1459 | 0.74 | 0.144572 |
Target: 5'- cGGCuGACCGGCGAA-CGAACCCgucaGGUAg -3' miRNA: 3'- -UCGcUUGGCCGCUUcGCUUGGG----CCAU- -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 10872 | 0.78 | 0.075082 |
Target: 5'- gGGUGGACCGGCGuccgGGUGGACCCGuGUu -3' miRNA: 3'- -UCGCUUGGCCGCu---UCGCUUGGGC-CAu -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 5977 | 1.06 | 0.000608 |
Target: 5'- gAGCGAACCGGCGAAGCGAACCCGGUAc -3' miRNA: 3'- -UCGCUUGGCCGCUUCGCUUGGGCCAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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