miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8078 3' -55.8 NC_001978.2 + 6410 1.07 0.000846
Target:  5'- gAUCGGGAAUGCGCGACACGUGGUCGAg -3'
miRNA:   3'- -UAGCCCUUACGCGCUGUGCACCAGCU- -5'
8078 3' -55.8 NC_001978.2 + 18209 0.73 0.258818
Target:  5'- uUCGGGAccuucaGCGCGuccCACGUGGUCu- -3'
miRNA:   3'- uAGCCCUua----CGCGCu--GUGCACCAGcu -5'
8078 3' -55.8 NC_001978.2 + 1371 0.71 0.309648
Target:  5'- -gCGGGAAUGUGCcgcgcaauCACGgGGUCGAu -3'
miRNA:   3'- uaGCCCUUACGCGcu------GUGCaCCAGCU- -5'
8078 3' -55.8 NC_001978.2 + 12157 0.71 0.309648
Target:  5'- uAUCGGGGGcacggcuggGgGCGGCACGUgggcauGGUCGAg -3'
miRNA:   3'- -UAGCCCUUa--------CgCGCUGUGCA------CCAGCU- -5'
8078 3' -55.8 NC_001978.2 + 34432 0.69 0.442734
Target:  5'- -cCGGGGcucagaaaGUGUGCGAa--GUGGUCGGc -3'
miRNA:   3'- uaGCCCU--------UACGCGCUgugCACCAGCU- -5'
8078 3' -55.8 NC_001978.2 + 15734 0.68 0.50428
Target:  5'- uGUgGGcGAAgucGgGCGGCGUGUGGUCGAa -3'
miRNA:   3'- -UAgCC-CUUa--CgCGCUGUGCACCAGCU- -5'
8078 3' -55.8 NC_001978.2 + 4663 0.67 0.547292
Target:  5'- uUCGGGAGauCaCGGCuauggACGUGGUCGAg -3'
miRNA:   3'- uAGCCCUUacGcGCUG-----UGCACCAGCU- -5'
8078 3' -55.8 NC_001978.2 + 4494 0.67 0.547292
Target:  5'- --aGGGAAcGCGUGu--CGUGGUUGAa -3'
miRNA:   3'- uagCCCUUaCGCGCuguGCACCAGCU- -5'
8078 3' -55.8 NC_001978.2 + 15550 0.67 0.558234
Target:  5'- aGUCGGGcggcagGgGCGACGuCGgcaaGGUCGAc -3'
miRNA:   3'- -UAGCCCuua---CgCGCUGU-GCa---CCAGCU- -5'
8078 3' -55.8 NC_001978.2 + 33262 0.66 0.624875
Target:  5'- aGUUGGGcgcuAcgGCGUGAag-GUGGUCGAg -3'
miRNA:   3'- -UAGCCC----UuaCGCGCUgugCACCAGCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.