miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8078 5' -57.1 NC_001978.2 + 32460 0.66 0.544129
Target:  5'- aGUCGUGCGGcuucaguagguuGUGUGCGCcCuu-CCAu -3'
miRNA:   3'- aCAGCGCGCU------------CACACGCGuGuguGGU- -5'
8078 5' -57.1 NC_001978.2 + 41211 0.66 0.533307
Target:  5'- cGUCGUGCuauccguaagGcAGUGgGCGCGCACugUg -3'
miRNA:   3'- aCAGCGCG----------C-UCACaCGCGUGUGugGu -5'
8078 5' -57.1 NC_001978.2 + 8087 0.66 0.511903
Target:  5'- uUGUCGCG-GAGc--GCGCGCACGuuCCGc -3'
miRNA:   3'- -ACAGCGCgCUCacaCGCGUGUGU--GGU- -5'
8078 5' -57.1 NC_001978.2 + 7007 0.66 0.511903
Target:  5'- cGUCGUcuaaGCGGGUGUcacugauagacGCGacCGCGCACCc -3'
miRNA:   3'- aCAGCG----CGCUCACA-----------CGC--GUGUGUGGu -5'
8078 5' -57.1 NC_001978.2 + 23828 0.66 0.490862
Target:  5'- cGUCGC-CGgaAGccUGgGCACACACCAu -3'
miRNA:   3'- aCAGCGcGC--UCacACgCGUGUGUGGU- -5'
8078 5' -57.1 NC_001978.2 + 22112 0.67 0.450053
Target:  5'- cGUCG-GCc-GUGUGCGCGCugAUCu -3'
miRNA:   3'- aCAGCgCGcuCACACGCGUGugUGGu -5'
8078 5' -57.1 NC_001978.2 + 18886 0.67 0.430359
Target:  5'- cGUCGauaGCGGGgaacgccGCGCGCAC-CCAa -3'
miRNA:   3'- aCAGCg--CGCUCaca----CGCGUGUGuGGU- -5'
8078 5' -57.1 NC_001978.2 + 1513 0.68 0.400861
Target:  5'- uUGUUGUGUGcGUG-GCGCGCaagaacgggaagaGCACCAu -3'
miRNA:   3'- -ACAGCGCGCuCACaCGCGUG-------------UGUGGU- -5'
8078 5' -57.1 NC_001978.2 + 6304 0.68 0.392542
Target:  5'- -uUCG-GUG-GUGUGUGCGCACACUc -3'
miRNA:   3'- acAGCgCGCuCACACGCGUGUGUGGu -5'
8078 5' -57.1 NC_001978.2 + 364 0.68 0.392542
Target:  5'- gUGUCGgGgGAGUagGCGCcCAUACCGg -3'
miRNA:   3'- -ACAGCgCgCUCAcaCGCGuGUGUGGU- -5'
8078 5' -57.1 NC_001978.2 + 226 0.69 0.356952
Target:  5'- gGUCGaGCGccccGUGUGCcCGCGCACCu -3'
miRNA:   3'- aCAGCgCGCu---CACACGcGUGUGUGGu -5'
8078 5' -57.1 NC_001978.2 + 30914 0.69 0.356952
Target:  5'- aUGUCGCGCuGAGUG-GCGCcCAUggACuCAa -3'
miRNA:   3'- -ACAGCGCG-CUCACaCGCGuGUG--UG-GU- -5'
8078 5' -57.1 NC_001978.2 + 27030 0.71 0.278228
Target:  5'- cGUCGCGUGAagcucauuccGUucGUGCGCuacuuCGCGCCGg -3'
miRNA:   3'- aCAGCGCGCU----------CA--CACGCGu----GUGUGGU- -5'
8078 5' -57.1 NC_001978.2 + 6376 1.08 0.000496
Target:  5'- uUGUCGCGCGAGUGUGCGCACACACCAc -3'
miRNA:   3'- -ACAGCGCGCUCACACGCGUGUGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.