Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8078 | 5' | -57.1 | NC_001978.2 | + | 32460 | 0.66 | 0.544129 |
Target: 5'- aGUCGUGCGGcuucaguagguuGUGUGCGCcCuu-CCAu -3' miRNA: 3'- aCAGCGCGCU------------CACACGCGuGuguGGU- -5' |
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8078 | 5' | -57.1 | NC_001978.2 | + | 41211 | 0.66 | 0.533307 |
Target: 5'- cGUCGUGCuauccguaagGcAGUGgGCGCGCACugUg -3' miRNA: 3'- aCAGCGCG----------C-UCACaCGCGUGUGugGu -5' |
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8078 | 5' | -57.1 | NC_001978.2 | + | 7007 | 0.66 | 0.511903 |
Target: 5'- cGUCGUcuaaGCGGGUGUcacugauagacGCGacCGCGCACCc -3' miRNA: 3'- aCAGCG----CGCUCACA-----------CGC--GUGUGUGGu -5' |
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8078 | 5' | -57.1 | NC_001978.2 | + | 8087 | 0.66 | 0.511903 |
Target: 5'- uUGUCGCG-GAGc--GCGCGCACGuuCCGc -3' miRNA: 3'- -ACAGCGCgCUCacaCGCGUGUGU--GGU- -5' |
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8078 | 5' | -57.1 | NC_001978.2 | + | 23828 | 0.66 | 0.490862 |
Target: 5'- cGUCGC-CGgaAGccUGgGCACACACCAu -3' miRNA: 3'- aCAGCGcGC--UCacACgCGUGUGUGGU- -5' |
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8078 | 5' | -57.1 | NC_001978.2 | + | 22112 | 0.67 | 0.450053 |
Target: 5'- cGUCG-GCc-GUGUGCGCGCugAUCu -3' miRNA: 3'- aCAGCgCGcuCACACGCGUGugUGGu -5' |
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8078 | 5' | -57.1 | NC_001978.2 | + | 18886 | 0.67 | 0.430359 |
Target: 5'- cGUCGauaGCGGGgaacgccGCGCGCAC-CCAa -3' miRNA: 3'- aCAGCg--CGCUCaca----CGCGUGUGuGGU- -5' |
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8078 | 5' | -57.1 | NC_001978.2 | + | 1513 | 0.68 | 0.400861 |
Target: 5'- uUGUUGUGUGcGUG-GCGCGCaagaacgggaagaGCACCAu -3' miRNA: 3'- -ACAGCGCGCuCACaCGCGUG-------------UGUGGU- -5' |
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8078 | 5' | -57.1 | NC_001978.2 | + | 6304 | 0.68 | 0.392542 |
Target: 5'- -uUCG-GUG-GUGUGUGCGCACACUc -3' miRNA: 3'- acAGCgCGCuCACACGCGUGUGUGGu -5' |
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8078 | 5' | -57.1 | NC_001978.2 | + | 364 | 0.68 | 0.392542 |
Target: 5'- gUGUCGgGgGAGUagGCGCcCAUACCGg -3' miRNA: 3'- -ACAGCgCgCUCAcaCGCGuGUGUGGU- -5' |
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8078 | 5' | -57.1 | NC_001978.2 | + | 226 | 0.69 | 0.356952 |
Target: 5'- gGUCGaGCGccccGUGUGCcCGCGCACCu -3' miRNA: 3'- aCAGCgCGCu---CACACGcGUGUGUGGu -5' |
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8078 | 5' | -57.1 | NC_001978.2 | + | 30914 | 0.69 | 0.356952 |
Target: 5'- aUGUCGCGCuGAGUG-GCGCcCAUggACuCAa -3' miRNA: 3'- -ACAGCGCG-CUCACaCGCGuGUG--UG-GU- -5' |
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8078 | 5' | -57.1 | NC_001978.2 | + | 27030 | 0.71 | 0.278228 |
Target: 5'- cGUCGCGUGAagcucauuccGUucGUGCGCuacuuCGCGCCGg -3' miRNA: 3'- aCAGCGCGCU----------CA--CACGCGu----GUGUGGU- -5' |
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8078 | 5' | -57.1 | NC_001978.2 | + | 6376 | 1.08 | 0.000496 |
Target: 5'- uUGUCGCGCGAGUGUGCGCACACACCAc -3' miRNA: 3'- -ACAGCGCGCUCACACGCGUGUGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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