Results 21 - 30 of 30 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 8079 | 3' | -53.6 | NC_001978.2 | + | 7761 | 0.75 | 0.275473 |
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Target: 5'- aGCGAAGcG-GCGCUGAAC-UCACCCu- -3' miRNA: 3'- -CGCUUC-CaCGUGACUUGcAGUGGGcc -5' |
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| 8079 | 3' | -53.6 | NC_001978.2 | + | 1770 | 0.68 | 0.619083 |
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Target: 5'- cCGGAucacGUcGCGCUGAACGUCGCacaCGGc -3' miRNA: 3'- cGCUUc---CA-CGUGACUUGCAGUGg--GCC- -5' |
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| 8079 | 3' | -53.6 | NC_001978.2 | + | 26025 | 0.68 | 0.645982 |
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Target: 5'- uGCccGGGUcGCGCUcacgccagucaguaaGGuCGUCACCCGGa -3' miRNA: 3'- -CGcuUCCA-CGUGA---------------CUuGCAGUGGGCC- -5' |
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| 8079 | 3' | -53.6 | NC_001978.2 | + | 2865 | 0.68 | 0.663881 |
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Target: 5'- cGUGAuccGGGUGCACgaaGACGUUGCCUu- -3' miRNA: 3'- -CGCU---UCCACGUGac-UUGCAGUGGGcc -5' |
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| 8079 | 3' | -53.6 | NC_001978.2 | + | 32341 | 0.67 | 0.697194 |
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Target: 5'- cGUGAAcguccGUcCGCUGGGCGUCgugACCCGGu -3' miRNA: 3'- -CGCUUc----CAcGUGACUUGCAG---UGGGCC- -5' |
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| 8079 | 3' | -53.6 | NC_001978.2 | + | 19550 | 0.67 | 0.719094 |
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Target: 5'- cGUGAAGGgucacgGCACg--GCGUCACCg-- -3' miRNA: 3'- -CGCUUCCa-----CGUGacuUGCAGUGGgcc -5' |
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| 8079 | 3' | -53.6 | NC_001978.2 | + | 4645 | 0.66 | 0.75964 |
|
Target: 5'- cGCgGAAGGUGaaggacgaaccCUGAAgGUCGCCCc- -3' miRNA: 3'- -CG-CUUCCACgu---------GACUUgCAGUGGGcc -5' |
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| 8079 | 3' | -53.6 | NC_001978.2 | + | 9797 | 0.66 | 0.772069 |
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Target: 5'- aGCcuGGGUGC-CgaaGAGCGUCACagCGGu -3' miRNA: 3'- -CGcuUCCACGuGa--CUUGCAGUGg-GCC- -5' |
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| 8079 | 3' | -53.6 | NC_001978.2 | + | 39402 | 0.66 | 0.782263 |
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Target: 5'- cGUGAucGGGUcGCGCUGAauGCGguaACCCu- -3' miRNA: 3'- -CGCU--UCCA-CGUGACU--UGCag-UGGGcc -5' |
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| 8079 | 3' | -53.6 | NC_001978.2 | + | 6636 | 1.12 | 0.000726 |
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Target: 5'- cGCGAAGGUGCACUGAACGUCACCCGGc -3' miRNA: 3'- -CGCUUCCACGUGACUUGCAGUGGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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