miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8079 5' -54.7 NC_001978.2 + 31124 0.66 0.612186
Target:  5'- -gCAGcGGCUUCGAgcACAGcggcaaGCGCCUc -3'
miRNA:   3'- aaGUC-CCGAAGCU--UGUCag----CGUGGAa -5'
8079 5' -54.7 NC_001978.2 + 34757 0.66 0.612186
Target:  5'- aUguGGGCUuucuUCGggUcccGGUCGCACUc- -3'
miRNA:   3'- aAguCCCGA----AGCuuG---UCAGCGUGGaa -5'
8079 5' -54.7 NC_001978.2 + 4999 0.66 0.600642
Target:  5'- gUCAGGGac-CGAagcucaGCGGUCGCACgCUc -3'
miRNA:   3'- aAGUCCCgaaGCU------UGUCAGCGUG-GAa -5'
8079 5' -54.7 NC_001978.2 + 9231 0.66 0.566229
Target:  5'- cUUCAGGGCUUCGuucgcgucggcGACGGauUCGCcguaACCg- -3'
miRNA:   3'- -AAGUCCCGAAGC-----------UUGUC--AGCG----UGGaa -5'
8079 5' -54.7 NC_001978.2 + 21595 0.67 0.543566
Target:  5'- -aCGGGGCUUCGucauGCcGUCacaGCGCCg- -3'
miRNA:   3'- aaGUCCCGAAGCu---UGuCAG---CGUGGaa -5'
8079 5' -54.7 NC_001978.2 + 30343 0.67 0.532345
Target:  5'- cUCGGcGGCUUCGAGCAuGgacgCGUagACCUUc -3'
miRNA:   3'- aAGUC-CCGAAGCUUGU-Ca---GCG--UGGAA- -5'
8079 5' -54.7 NC_001978.2 + 10604 0.67 0.521208
Target:  5'- --aGGGGCUUCc--CGGUCGCAuCCUg -3'
miRNA:   3'- aagUCCCGAAGcuuGUCAGCGU-GGAa -5'
8079 5' -54.7 NC_001978.2 + 950 0.68 0.488377
Target:  5'- -cCGGcGGCUUCGucgcgcuucauGCGGUCGCGCUUc -3'
miRNA:   3'- aaGUC-CCGAAGCu----------UGUCAGCGUGGAa -5'
8079 5' -54.7 NC_001978.2 + 25063 0.69 0.406114
Target:  5'- gUCGgcGGGCUUCGGACcgaaGGUCaGCGCCc- -3'
miRNA:   3'- aAGU--CCCGAAGCUUG----UCAG-CGUGGaa -5'
8079 5' -54.7 NC_001978.2 + 32014 0.71 0.308337
Target:  5'- uUUCAGGGCUUgugcaaCGAAgAGcgCGCACCa- -3'
miRNA:   3'- -AAGUCCCGAA------GCUUgUCa-GCGUGGaa -5'
8079 5' -54.7 NC_001978.2 + 11396 0.77 0.129423
Target:  5'- gUUCAGGGCUUCcguGAacucagcGCGGUCGCGCCc- -3'
miRNA:   3'- -AAGUCCCGAAG---CU-------UGUCAGCGUGGaa -5'
8079 5' -54.7 NC_001978.2 + 6600 1.02 0.001753
Target:  5'- cUUCAGGGCUUCGAACAGUCGCACCUUc -3'
miRNA:   3'- -AAGUCCCGAAGCUUGUCAGCGUGGAA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.