Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8079 | 5' | -54.7 | NC_001978.2 | + | 31124 | 0.66 | 0.612186 |
Target: 5'- -gCAGcGGCUUCGAgcACAGcggcaaGCGCCUc -3' miRNA: 3'- aaGUC-CCGAAGCU--UGUCag----CGUGGAa -5' |
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8079 | 5' | -54.7 | NC_001978.2 | + | 34757 | 0.66 | 0.612186 |
Target: 5'- aUguGGGCUuucuUCGggUcccGGUCGCACUc- -3' miRNA: 3'- aAguCCCGA----AGCuuG---UCAGCGUGGaa -5' |
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8079 | 5' | -54.7 | NC_001978.2 | + | 4999 | 0.66 | 0.600642 |
Target: 5'- gUCAGGGac-CGAagcucaGCGGUCGCACgCUc -3' miRNA: 3'- aAGUCCCgaaGCU------UGUCAGCGUG-GAa -5' |
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8079 | 5' | -54.7 | NC_001978.2 | + | 9231 | 0.66 | 0.566229 |
Target: 5'- cUUCAGGGCUUCGuucgcgucggcGACGGauUCGCcguaACCg- -3' miRNA: 3'- -AAGUCCCGAAGC-----------UUGUC--AGCG----UGGaa -5' |
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8079 | 5' | -54.7 | NC_001978.2 | + | 21595 | 0.67 | 0.543566 |
Target: 5'- -aCGGGGCUUCGucauGCcGUCacaGCGCCg- -3' miRNA: 3'- aaGUCCCGAAGCu---UGuCAG---CGUGGaa -5' |
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8079 | 5' | -54.7 | NC_001978.2 | + | 30343 | 0.67 | 0.532345 |
Target: 5'- cUCGGcGGCUUCGAGCAuGgacgCGUagACCUUc -3' miRNA: 3'- aAGUC-CCGAAGCUUGU-Ca---GCG--UGGAA- -5' |
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8079 | 5' | -54.7 | NC_001978.2 | + | 10604 | 0.67 | 0.521208 |
Target: 5'- --aGGGGCUUCc--CGGUCGCAuCCUg -3' miRNA: 3'- aagUCCCGAAGcuuGUCAGCGU-GGAa -5' |
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8079 | 5' | -54.7 | NC_001978.2 | + | 950 | 0.68 | 0.488377 |
Target: 5'- -cCGGcGGCUUCGucgcgcuucauGCGGUCGCGCUUc -3' miRNA: 3'- aaGUC-CCGAAGCu----------UGUCAGCGUGGAa -5' |
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8079 | 5' | -54.7 | NC_001978.2 | + | 25063 | 0.69 | 0.406114 |
Target: 5'- gUCGgcGGGCUUCGGACcgaaGGUCaGCGCCc- -3' miRNA: 3'- aAGU--CCCGAAGCUUG----UCAG-CGUGGaa -5' |
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8079 | 5' | -54.7 | NC_001978.2 | + | 32014 | 0.71 | 0.308337 |
Target: 5'- uUUCAGGGCUUgugcaaCGAAgAGcgCGCACCa- -3' miRNA: 3'- -AAGUCCCGAA------GCUUgUCa-GCGUGGaa -5' |
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8079 | 5' | -54.7 | NC_001978.2 | + | 11396 | 0.77 | 0.129423 |
Target: 5'- gUUCAGGGCUUCcguGAacucagcGCGGUCGCGCCc- -3' miRNA: 3'- -AAGUCCCGAAG---CU-------UGUCAGCGUGGaa -5' |
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8079 | 5' | -54.7 | NC_001978.2 | + | 6600 | 1.02 | 0.001753 |
Target: 5'- cUUCAGGGCUUCGAACAGUCGCACCUUc -3' miRNA: 3'- -AAGUCCCGAAGCUUGUCAGCGUGGAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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