miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
808 5' -48.3 NC_000866.4 + 103846 0.66 0.999386
Target:  5'- aUGCAguauGGGG-UCCAagUGCUCCAGa -3'
miRNA:   3'- -ACGUagu-CCUUgAGGUaaAUGAGGUC- -5'
808 5' -48.3 NC_000866.4 + 119421 0.67 0.998852
Target:  5'- aGCGUCAGGAuCaUUAUUaacUGCUUCAGg -3'
miRNA:   3'- aCGUAGUCCUuGaGGUAA---AUGAGGUC- -5'
808 5' -48.3 NC_000866.4 + 56527 0.67 0.998852
Target:  5'- aGuCAUCuuuauGGAACUUC---UACUCCAGa -3'
miRNA:   3'- aC-GUAGu----CCUUGAGGuaaAUGAGGUC- -5'
808 5' -48.3 NC_000866.4 + 42031 0.67 0.998603
Target:  5'- -uCAUCuGGAAUUCCAUagACUUCAa -3'
miRNA:   3'- acGUAGuCCUUGAGGUAaaUGAGGUc -5'
808 5' -48.3 NC_000866.4 + 99167 0.67 0.998309
Target:  5'- aUGCAaaAGGAGCUUCugcaUUACUCCc- -3'
miRNA:   3'- -ACGUagUCCUUGAGGua--AAUGAGGuc -5'
808 5' -48.3 NC_000866.4 + 13248 0.68 0.994447
Target:  5'- aGCAUCuGGGGCUUCA---AUUCCAu -3'
miRNA:   3'- aCGUAGuCCUUGAGGUaaaUGAGGUc -5'
808 5' -48.3 NC_000866.4 + 155758 0.7 0.985387
Target:  5'- gGCAUCaAGGAAauuUUCCAUUgaaUCCAGc -3'
miRNA:   3'- aCGUAG-UCCUU---GAGGUAAaugAGGUC- -5'
808 5' -48.3 NC_000866.4 + 84718 0.7 0.98348
Target:  5'- cGCAUCAGGAAUgcuuuUCUAUaaagcCUCCGGu -3'
miRNA:   3'- aCGUAGUCCUUG-----AGGUAaau--GAGGUC- -5'
808 5' -48.3 NC_000866.4 + 90604 0.72 0.948577
Target:  5'- aUGCAUCgucaacaacaaaGGGAAUUCUAUUUAUUCCc- -3'
miRNA:   3'- -ACGUAG------------UCCUUGAGGUAAAUGAGGuc -5'
808 5' -48.3 NC_000866.4 + 90777 1.09 0.015115
Target:  5'- aUGCAUCAGGAACUCCAUUUACUCCAGc -3'
miRNA:   3'- -ACGUAGUCCUUGAGGUAAAUGAGGUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.