miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8080 5' -56.8 NC_001978.2 + 647 0.66 0.538826
Target:  5'- uUgCUGAAcGCggCGUACACGGCGCGg- -3'
miRNA:   3'- uAgGGCUUaCG--GUAUGUGCCGCGCga -5'
8080 5' -56.8 NC_001978.2 + 34272 0.66 0.538826
Target:  5'- uUgCCGGAgccacGCUGUACACGaCGCGCg -3'
miRNA:   3'- uAgGGCUUa----CGGUAUGUGCcGCGCGa -5'
8080 5' -56.8 NC_001978.2 + 19305 0.66 0.538826
Target:  5'- -gCCCGAcgGCUucaugGCuucccCGGCGUGCg -3'
miRNA:   3'- uaGGGCUuaCGGua---UGu----GCCGCGCGa -5'
8080 5' -56.8 NC_001978.2 + 24150 0.66 0.517124
Target:  5'- cUUCCGAAUGaucCCGUcggacGCACGG-GCGCg -3'
miRNA:   3'- uAGGGCUUAC---GGUA-----UGUGCCgCGCGa -5'
8080 5' -56.8 NC_001978.2 + 6783 0.66 0.517124
Target:  5'- -gCCCGGc-GUCGUGacaACGGCGUGCg -3'
miRNA:   3'- uaGGGCUuaCGGUAUg--UGCCGCGCGa -5'
8080 5' -56.8 NC_001978.2 + 2383 0.66 0.495781
Target:  5'- cGUCCgCGAAgaGCUAcACACGGCGCu-- -3'
miRNA:   3'- -UAGG-GCUUa-CGGUaUGUGCCGCGcga -5'
8080 5' -56.8 NC_001978.2 + 41146 0.66 0.485259
Target:  5'- -gUgUGAAgaGCCAUGCgaaGCGGCGUGCUg -3'
miRNA:   3'- uaGgGCUUa-CGGUAUG---UGCCGCGCGA- -5'
8080 5' -56.8 NC_001978.2 + 10931 0.66 0.485259
Target:  5'- -aCCCGGAcGCCGguccaccCAUGGCGCGa- -3'
miRNA:   3'- uaGGGCUUaCGGUau-----GUGCCGCGCga -5'
8080 5' -56.8 NC_001978.2 + 27650 0.66 0.482123
Target:  5'- cAUCCCGGAgacugagcGCgaccuucgugaguuCAUGCACugGGCGCGCa -3'
miRNA:   3'- -UAGGGCUUa-------CG--------------GUAUGUG--CCGCGCGa -5'
8080 5' -56.8 NC_001978.2 + 6662 0.67 0.474845
Target:  5'- -cCCCGug-GCUAUGCGCuccGGCGCGa- -3'
miRNA:   3'- uaGGGCuuaCGGUAUGUG---CCGCGCga -5'
8080 5' -56.8 NC_001978.2 + 879 0.67 0.45436
Target:  5'- uGUCCgaauggguCGAGUGCuCcgGCGCcugGGCGCGCg -3'
miRNA:   3'- -UAGG--------GCUUACG-GuaUGUG---CCGCGCGa -5'
8080 5' -56.8 NC_001978.2 + 2587 0.67 0.434364
Target:  5'- -gCCUGAGUGgCAgGCACcuGCGCGCg -3'
miRNA:   3'- uaGGGCUUACgGUaUGUGc-CGCGCGa -5'
8080 5' -56.8 NC_001978.2 + 37292 0.67 0.432393
Target:  5'- -gCCCG-AUGCCuaggucuucgcACAUGGCGCGUUc -3'
miRNA:   3'- uaGGGCuUACGGua---------UGUGCCGCGCGA- -5'
8080 5' -56.8 NC_001978.2 + 22944 0.7 0.287196
Target:  5'- -aCCUGAgccccucaGUGCCuUACACGG-GCGCUg -3'
miRNA:   3'- uaGGGCU--------UACGGuAUGUGCCgCGCGA- -5'
8080 5' -56.8 NC_001978.2 + 33860 0.71 0.265695
Target:  5'- -aCCCGggUGCCG-AC-CGuGCGCGUg -3'
miRNA:   3'- uaGGGCuuACGGUaUGuGC-CGCGCGa -5'
8080 5' -56.8 NC_001978.2 + 35249 0.71 0.258823
Target:  5'- gAUCCUGAAcccGUCGUAC-CGGgGCGCUg -3'
miRNA:   3'- -UAGGGCUUa--CGGUAUGuGCCgCGCGA- -5'
8080 5' -56.8 NC_001978.2 + 19362 0.71 0.245515
Target:  5'- cGUCCCGAcggacgccgacGUGaCGUGCaaGCGGUGCGCg -3'
miRNA:   3'- -UAGGGCU-----------UACgGUAUG--UGCCGCGCGa -5'
8080 5' -56.8 NC_001978.2 + 12343 0.72 0.239078
Target:  5'- gGUCCCGAcacgGCCGgacaACGCGGCG-GCa -3'
miRNA:   3'- -UAGGGCUua--CGGUa---UGUGCCGCgCGa -5'
8080 5' -56.8 NC_001978.2 + 38643 0.72 0.220607
Target:  5'- cGUCCCGAAcGCCgacGUGCcCGGCGCuucGCUg -3'
miRNA:   3'- -UAGGGCUUaCGG---UAUGuGCCGCG---CGA- -5'
8080 5' -56.8 NC_001978.2 + 6826 1.05 0.000811
Target:  5'- aAUCCCGAAUGCCAUACACGGCGCGCUc -3'
miRNA:   3'- -UAGGGCUUACGGUAUGUGCCGCGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.