miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8081 3' -54.1 NC_001978.2 + 7160 1.12 0.00072
Target:  5'- gGCCCGGAAGCCGACAGACUCAAUCGGc -3'
miRNA:   3'- -CGGGCCUUCGGCUGUCUGAGUUAGCC- -5'
8081 3' -54.1 NC_001978.2 + 25092 0.77 0.184774
Target:  5'- aCCCguaaGGGAGUCGGCAacccGGCUCAGUCGGc -3'
miRNA:   3'- cGGG----CCUUCGGCUGU----CUGAGUUAGCC- -5'
8081 3' -54.1 NC_001978.2 + 3425 0.76 0.228696
Target:  5'- uCCCGGAAugaugcuGCCGGguGACUUcGUCGGg -3'
miRNA:   3'- cGGGCCUU-------CGGCUguCUGAGuUAGCC- -5'
8081 3' -54.1 NC_001978.2 + 19878 0.76 0.229305
Target:  5'- -gCCGGggGCCGACGcGAUUCAcgCGc -3'
miRNA:   3'- cgGGCCuuCGGCUGU-CUGAGUuaGCc -5'
8081 3' -54.1 NC_001978.2 + 2639 0.74 0.289879
Target:  5'- cGCCgGGuuGCCGuCGuGGCUCAGUCGa -3'
miRNA:   3'- -CGGgCCuuCGGCuGU-CUGAGUUAGCc -5'
8081 3' -54.1 NC_001978.2 + 20129 0.73 0.345179
Target:  5'- gGCCCGGAA-CCucaACGGACUCu-UCGGa -3'
miRNA:   3'- -CGGGCCUUcGGc--UGUCUGAGuuAGCC- -5'
8081 3' -54.1 NC_001978.2 + 7331 0.72 0.389093
Target:  5'- gGCCCGG-GGUCGACGG-CUCGaagGUCGc -3'
miRNA:   3'- -CGGGCCuUCGGCUGUCuGAGU---UAGCc -5'
8081 3' -54.1 NC_001978.2 + 27094 0.71 0.426762
Target:  5'- -aCCGGAAGCUucgGGCGGAgUCGG-CGGg -3'
miRNA:   3'- cgGGCCUUCGG---CUGUCUgAGUUaGCC- -5'
8081 3' -54.1 NC_001978.2 + 20371 0.71 0.426762
Target:  5'- cCCCGGAAGCCGAagcggcgaAGGCcgaAGUCGa -3'
miRNA:   3'- cGGGCCUUCGGCUg-------UCUGag-UUAGCc -5'
8081 3' -54.1 NC_001978.2 + 4413 0.71 0.436513
Target:  5'- uCCCGGAAGCCGcccagguCGuGACUCAGuUCGu -3'
miRNA:   3'- cGGGCCUUCGGCu------GU-CUGAGUU-AGCc -5'
8081 3' -54.1 NC_001978.2 + 14220 0.7 0.487091
Target:  5'- cGCCCGauAGCCGACc-ACUCGAcCGGc -3'
miRNA:   3'- -CGGGCcuUCGGCUGucUGAGUUaGCC- -5'
8081 3' -54.1 NC_001978.2 + 10912 0.7 0.497541
Target:  5'- gGCCCGGAAGacgucuuccuuCCGAacGGCUCGA-CGGu -3'
miRNA:   3'- -CGGGCCUUC-----------GGCUguCUGAGUUaGCC- -5'
8081 3' -54.1 NC_001978.2 + 32973 0.7 0.518734
Target:  5'- gGCa-GGggGCaCGACcGGCUCAguGUCGGc -3'
miRNA:   3'- -CGggCCuuCG-GCUGuCUGAGU--UAGCC- -5'
8081 3' -54.1 NC_001978.2 + 8660 0.69 0.562108
Target:  5'- uCCCGac-GUCGGCGGGCUCGAUCu- -3'
miRNA:   3'- cGGGCcuuCGGCUGUCUGAGUUAGcc -5'
8081 3' -54.1 NC_001978.2 + 6460 0.69 0.568706
Target:  5'- aGCCUGGGcaAGCUGAaugcugccgaacuCAGACUgaagcugaagcgccCGAUCGGg -3'
miRNA:   3'- -CGGGCCU--UCGGCU-------------GUCUGA--------------GUUAGCC- -5'
8081 3' -54.1 NC_001978.2 + 36795 0.68 0.603061
Target:  5'- gGCCUGGGGcGCCgucuccggcuccguGACGGGCUCAGgcuccgcCGGu -3'
miRNA:   3'- -CGGGCCUU-CGG--------------CUGUCUGAGUUa------GCC- -5'
8081 3' -54.1 NC_001978.2 + 29174 0.68 0.606403
Target:  5'- -aCCGGAAccguacguauGCCGucgugaacuauCAGugUCAGUCGGc -3'
miRNA:   3'- cgGGCCUU----------CGGCu----------GUCugAGUUAGCC- -5'
8081 3' -54.1 NC_001978.2 + 36866 0.68 0.627606
Target:  5'- cGCgCCGGAAcgucgucGUCGGCAGGCUC---CGGc -3'
miRNA:   3'- -CG-GGCCUU-------CGGCUGUCUGAGuuaGCC- -5'
8081 3' -54.1 NC_001978.2 + 11666 0.68 0.628723
Target:  5'- aCCCGGuAAGCCG-CuucACUCAGUaCGGc -3'
miRNA:   3'- cGGGCC-UUCGGCuGuc-UGAGUUA-GCC- -5'
8081 3' -54.1 NC_001978.2 + 38535 0.67 0.651056
Target:  5'- cGCgaCGGggGCCGGuuCAGGUUC-GUCGGg -3'
miRNA:   3'- -CGg-GCCuuCGGCU--GUCUGAGuUAGCC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.