Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8081 | 3' | -54.1 | NC_001978.2 | + | 7160 | 1.12 | 0.00072 |
Target: 5'- gGCCCGGAAGCCGACAGACUCAAUCGGc -3' miRNA: 3'- -CGGGCCUUCGGCUGUCUGAGUUAGCC- -5' |
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8081 | 3' | -54.1 | NC_001978.2 | + | 25092 | 0.77 | 0.184774 |
Target: 5'- aCCCguaaGGGAGUCGGCAacccGGCUCAGUCGGc -3' miRNA: 3'- cGGG----CCUUCGGCUGU----CUGAGUUAGCC- -5' |
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8081 | 3' | -54.1 | NC_001978.2 | + | 3425 | 0.76 | 0.228696 |
Target: 5'- uCCCGGAAugaugcuGCCGGguGACUUcGUCGGg -3' miRNA: 3'- cGGGCCUU-------CGGCUguCUGAGuUAGCC- -5' |
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8081 | 3' | -54.1 | NC_001978.2 | + | 19878 | 0.76 | 0.229305 |
Target: 5'- -gCCGGggGCCGACGcGAUUCAcgCGc -3' miRNA: 3'- cgGGCCuuCGGCUGU-CUGAGUuaGCc -5' |
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8081 | 3' | -54.1 | NC_001978.2 | + | 2639 | 0.74 | 0.289879 |
Target: 5'- cGCCgGGuuGCCGuCGuGGCUCAGUCGa -3' miRNA: 3'- -CGGgCCuuCGGCuGU-CUGAGUUAGCc -5' |
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8081 | 3' | -54.1 | NC_001978.2 | + | 20129 | 0.73 | 0.345179 |
Target: 5'- gGCCCGGAA-CCucaACGGACUCu-UCGGa -3' miRNA: 3'- -CGGGCCUUcGGc--UGUCUGAGuuAGCC- -5' |
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8081 | 3' | -54.1 | NC_001978.2 | + | 7331 | 0.72 | 0.389093 |
Target: 5'- gGCCCGG-GGUCGACGG-CUCGaagGUCGc -3' miRNA: 3'- -CGGGCCuUCGGCUGUCuGAGU---UAGCc -5' |
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8081 | 3' | -54.1 | NC_001978.2 | + | 27094 | 0.71 | 0.426762 |
Target: 5'- -aCCGGAAGCUucgGGCGGAgUCGG-CGGg -3' miRNA: 3'- cgGGCCUUCGG---CUGUCUgAGUUaGCC- -5' |
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8081 | 3' | -54.1 | NC_001978.2 | + | 20371 | 0.71 | 0.426762 |
Target: 5'- cCCCGGAAGCCGAagcggcgaAGGCcgaAGUCGa -3' miRNA: 3'- cGGGCCUUCGGCUg-------UCUGag-UUAGCc -5' |
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8081 | 3' | -54.1 | NC_001978.2 | + | 4413 | 0.71 | 0.436513 |
Target: 5'- uCCCGGAAGCCGcccagguCGuGACUCAGuUCGu -3' miRNA: 3'- cGGGCCUUCGGCu------GU-CUGAGUU-AGCc -5' |
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8081 | 3' | -54.1 | NC_001978.2 | + | 14220 | 0.7 | 0.487091 |
Target: 5'- cGCCCGauAGCCGACc-ACUCGAcCGGc -3' miRNA: 3'- -CGGGCcuUCGGCUGucUGAGUUaGCC- -5' |
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8081 | 3' | -54.1 | NC_001978.2 | + | 10912 | 0.7 | 0.497541 |
Target: 5'- gGCCCGGAAGacgucuuccuuCCGAacGGCUCGA-CGGu -3' miRNA: 3'- -CGGGCCUUC-----------GGCUguCUGAGUUaGCC- -5' |
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8081 | 3' | -54.1 | NC_001978.2 | + | 32973 | 0.7 | 0.518734 |
Target: 5'- gGCa-GGggGCaCGACcGGCUCAguGUCGGc -3' miRNA: 3'- -CGggCCuuCG-GCUGuCUGAGU--UAGCC- -5' |
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8081 | 3' | -54.1 | NC_001978.2 | + | 8660 | 0.69 | 0.562108 |
Target: 5'- uCCCGac-GUCGGCGGGCUCGAUCu- -3' miRNA: 3'- cGGGCcuuCGGCUGUCUGAGUUAGcc -5' |
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8081 | 3' | -54.1 | NC_001978.2 | + | 6460 | 0.69 | 0.568706 |
Target: 5'- aGCCUGGGcaAGCUGAaugcugccgaacuCAGACUgaagcugaagcgccCGAUCGGg -3' miRNA: 3'- -CGGGCCU--UCGGCU-------------GUCUGA--------------GUUAGCC- -5' |
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8081 | 3' | -54.1 | NC_001978.2 | + | 36795 | 0.68 | 0.603061 |
Target: 5'- gGCCUGGGGcGCCgucuccggcuccguGACGGGCUCAGgcuccgcCGGu -3' miRNA: 3'- -CGGGCCUU-CGG--------------CUGUCUGAGUUa------GCC- -5' |
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8081 | 3' | -54.1 | NC_001978.2 | + | 29174 | 0.68 | 0.606403 |
Target: 5'- -aCCGGAAccguacguauGCCGucgugaacuauCAGugUCAGUCGGc -3' miRNA: 3'- cgGGCCUU----------CGGCu----------GUCugAGUUAGCC- -5' |
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8081 | 3' | -54.1 | NC_001978.2 | + | 36866 | 0.68 | 0.627606 |
Target: 5'- cGCgCCGGAAcgucgucGUCGGCAGGCUC---CGGc -3' miRNA: 3'- -CG-GGCCUU-------CGGCUGUCUGAGuuaGCC- -5' |
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8081 | 3' | -54.1 | NC_001978.2 | + | 11666 | 0.68 | 0.628723 |
Target: 5'- aCCCGGuAAGCCG-CuucACUCAGUaCGGc -3' miRNA: 3'- cGGGCC-UUCGGCuGuc-UGAGUUA-GCC- -5' |
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8081 | 3' | -54.1 | NC_001978.2 | + | 38535 | 0.67 | 0.651056 |
Target: 5'- cGCgaCGGggGCCGGuuCAGGUUC-GUCGGg -3' miRNA: 3'- -CGg-GCCuuCGGCU--GUCUGAGuUAGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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