Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8081 | 3' | -54.1 | NC_001978.2 | + | 25092 | 0.77 | 0.184774 |
Target: 5'- aCCCguaaGGGAGUCGGCAacccGGCUCAGUCGGc -3' miRNA: 3'- cGGG----CCUUCGGCUGU----CUGAGUUAGCC- -5' |
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8081 | 3' | -54.1 | NC_001978.2 | + | 25976 | 0.66 | 0.749357 |
Target: 5'- aCCCGGGcaaguuccccAGCCGACugcacGACgccgucaAGUCGGc -3' miRNA: 3'- cGGGCCU----------UCGGCUGu----CUGag-----UUAGCC- -5' |
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8081 | 3' | -54.1 | NC_001978.2 | + | 26079 | 0.66 | 0.716181 |
Target: 5'- gGUCgCGGAcgggucgAGCCGACuuGACggcgucgugCAGUCGGc -3' miRNA: 3'- -CGG-GCCU-------UCGGCUGu-CUGa--------GUUAGCC- -5' |
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8081 | 3' | -54.1 | NC_001978.2 | + | 27094 | 0.71 | 0.426762 |
Target: 5'- -aCCGGAAGCUucgGGCGGAgUCGG-CGGg -3' miRNA: 3'- cgGGCCUUCGG---CUGUCUgAGUUaGCC- -5' |
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8081 | 3' | -54.1 | NC_001978.2 | + | 27244 | 0.65 | 0.755654 |
Target: 5'- uCCCGGGcgugcucgacgcuGCCGAC-GACUCcgcgauuguGUCGGg -3' miRNA: 3'- cGGGCCUu------------CGGCUGuCUGAGu--------UAGCC- -5' |
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8081 | 3' | -54.1 | NC_001978.2 | + | 28048 | 0.66 | 0.717266 |
Target: 5'- cGUCCuGggGCUGACGcGGgUCAAUCa- -3' miRNA: 3'- -CGGGcCuuCGGCUGU-CUgAGUUAGcc -5' |
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8081 | 3' | -54.1 | NC_001978.2 | + | 29174 | 0.68 | 0.606403 |
Target: 5'- -aCCGGAAccguacguauGCCGucgugaacuauCAGugUCAGUCGGc -3' miRNA: 3'- cgGGCCUU----------CGGCu----------GUCugAGUUAGCC- -5' |
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8081 | 3' | -54.1 | NC_001978.2 | + | 32669 | 0.66 | 0.728066 |
Target: 5'- cGCCCugggGGAAGCCGcCGGGCgu-AUCu- -3' miRNA: 3'- -CGGG----CCUUCGGCuGUCUGaguUAGcc -5' |
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8081 | 3' | -54.1 | NC_001978.2 | + | 32973 | 0.7 | 0.518734 |
Target: 5'- gGCa-GGggGCaCGACcGGCUCAguGUCGGc -3' miRNA: 3'- -CGggCCuuCG-GCUGuCUGAGU--UAGCC- -5' |
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8081 | 3' | -54.1 | NC_001978.2 | + | 34681 | 0.67 | 0.695418 |
Target: 5'- aCCCGGcAAGCUGgGCG--UUCAGUCGGu -3' miRNA: 3'- cGGGCC-UUCGGC-UGUcuGAGUUAGCC- -5' |
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8081 | 3' | -54.1 | NC_001978.2 | + | 34717 | 0.66 | 0.728066 |
Target: 5'- -gCCGGguGCa-ACgGGGCUCAGUCGGc -3' miRNA: 3'- cgGGCCuuCGgcUG-UCUGAGUUAGCC- -5' |
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8081 | 3' | -54.1 | NC_001978.2 | + | 35232 | 0.66 | 0.738767 |
Target: 5'- -aCCGGGGcGCUGACGGcgaACUCAGaagcCGGg -3' miRNA: 3'- cgGGCCUU-CGGCUGUC---UGAGUUa---GCC- -5' |
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8081 | 3' | -54.1 | NC_001978.2 | + | 36059 | 0.67 | 0.695418 |
Target: 5'- cGCCCGGGucGgCGGCAGuCUC---CGGg -3' miRNA: 3'- -CGGGCCUu-CgGCUGUCuGAGuuaGCC- -5' |
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8081 | 3' | -54.1 | NC_001978.2 | + | 36795 | 0.68 | 0.603061 |
Target: 5'- gGCCUGGGGcGCCgucuccggcuccguGACGGGCUCAGgcuccgcCGGu -3' miRNA: 3'- -CGGGCCUU-CGG--------------CUGUCUGAGUUa------GCC- -5' |
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8081 | 3' | -54.1 | NC_001978.2 | + | 36866 | 0.68 | 0.627606 |
Target: 5'- cGCgCCGGAAcgucgucGUCGGCAGGCUC---CGGc -3' miRNA: 3'- -CG-GGCCUU-------CGGCUGUCUGAGuuaGCC- -5' |
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8081 | 3' | -54.1 | NC_001978.2 | + | 38535 | 0.67 | 0.651056 |
Target: 5'- cGCgaCGGggGCCGGuuCAGGUUC-GUCGGg -3' miRNA: 3'- -CGg-GCCuuCGGCU--GUCUGAGuUAGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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