miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8082 3' -54 NC_001978.2 + 3665 0.66 0.670715
Target:  5'- gACGGAGGgugcgaaguuuUCGAAGGUGGCuaUGAGCc -3'
miRNA:   3'- -UGCCUUC-----------AGCUUCCACUGccGUUCGa -5'
8082 3' -54 NC_001978.2 + 7036 0.7 0.471016
Target:  5'- aGCGGAGucGUUGAGGGUuACgaggGGCAGGCg -3'
miRNA:   3'- -UGCCUU--CAGCUUCCAcUG----CCGUUCGa -5'
8082 3' -54 NC_001978.2 + 7491 1.07 0.001274
Target:  5'- cACGGAAGUCGAAGGUGACGGCAAGCUu -3'
miRNA:   3'- -UGCCUUCAGCUUCCACUGCCGUUCGA- -5'
8082 3' -54 NC_001978.2 + 8485 0.68 0.557562
Target:  5'- aGCGuGAAGUCGucGG-GAaucucgaaGGCAGGCUu -3'
miRNA:   3'- -UGC-CUUCAGCuuCCaCUg-------CCGUUCGA- -5'
8082 3' -54 NC_001978.2 + 10115 0.66 0.693236
Target:  5'- -aGGcaguGGUCGccuGGGUGACGuCAAGCg -3'
miRNA:   3'- ugCCu---UCAGCu--UCCACUGCcGUUCGa -5'
8082 3' -54 NC_001978.2 + 15748 0.74 0.261587
Target:  5'- gGCGGcguguGGUCGAAGGUgucgGACGGCGuucguGGCg -3'
miRNA:   3'- -UGCCu----UCAGCUUCCA----CUGCCGU-----UCGa -5'
8082 3' -54 NC_001978.2 + 19148 0.75 0.222689
Target:  5'- gGCGGggGcCGAAGGUGcuaGcGCGAGCg -3'
miRNA:   3'- -UGCCuuCaGCUUCCACug-C-CGUUCGa -5'
8082 3' -54 NC_001978.2 + 19368 0.67 0.602588
Target:  5'- gACGGAcGcCGAc-GUGACGuGCAAGCg -3'
miRNA:   3'- -UGCCUuCaGCUucCACUGC-CGUUCGa -5'
8082 3' -54 NC_001978.2 + 22018 0.7 0.460662
Target:  5'- aAC-GAAGUCGAuuGaGUcGACGGCAAGCg -3'
miRNA:   3'- -UGcCUUCAGCUu-C-CA-CUGCCGUUCGa -5'
8082 3' -54 NC_001978.2 + 22557 0.66 0.670715
Target:  5'- gACGGcucgCgGAAGGUGAuCGGUAAGCc -3'
miRNA:   3'- -UGCCuucaG-CUUCCACU-GCCGUUCGa -5'
8082 3' -54 NC_001978.2 + 22591 0.67 0.602588
Target:  5'- cACGGAAggcGUCGGGgcgcauGGUGAcCGGCAcucAGCg -3'
miRNA:   3'- -UGCCUU---CAGCUU------CCACU-GCCGU---UCGa -5'
8082 3' -54 NC_001978.2 + 25461 0.69 0.524426
Target:  5'- gGCGGcguAGUCGGcggcauccuGGGUGAgCGGCA-GCg -3'
miRNA:   3'- -UGCCu--UCAGCU---------UCCACU-GCCGUuCGa -5'
8082 3' -54 NC_001978.2 + 26076 0.66 0.693236
Target:  5'- cGCGGAcgGGUCGAGccgacuUGACGGCGucgugcagucGGCUg -3'
miRNA:   3'- -UGCCU--UCAGCUUcc----ACUGCCGU----------UCGA- -5'
8082 3' -54 NC_001978.2 + 35563 0.66 0.704408
Target:  5'- cCGGAuGUCGAGccGGaGACGGCGccccugAGCg -3'
miRNA:   3'- uGCCUuCAGCUU--CCaCUGCCGU------UCGa -5'
8082 3' -54 NC_001978.2 + 35824 0.7 0.430349
Target:  5'- gGCGGGaguGGUCGAgcuGGGcGACGGCGuugccaagGGCUu -3'
miRNA:   3'- -UGCCU---UCAGCU---UCCaCUGCCGU--------UCGA- -5'
8082 3' -54 NC_001978.2 + 39638 0.67 0.659391
Target:  5'- uGCGGAcgGGUCGAccaccuuccGGcGACGGCA-GCg -3'
miRNA:   3'- -UGCCU--UCAGCUu--------CCaCUGCCGUuCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.