miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8082 5' -53.3 NC_001978.2 + 12863 0.68 0.580817
Target:  5'- aUCGcGCUUauGUCGUCGGGCUCgAUUg -3'
miRNA:   3'- -AGU-UGAAgcCGGCAGUCCGAGgUAAg -5'
8082 5' -53.3 NC_001978.2 + 1477 0.67 0.660865
Target:  5'- aCAcCUUCGGCCGUU-GGCgCCGg-- -3'
miRNA:   3'- aGUuGAAGCCGGCAGuCCGaGGUaag -5'
8082 5' -53.3 NC_001978.2 + 10941 0.67 0.683644
Target:  5'- cUCGACggucCGGCCGaaccaugcguugUCGGGUUCCGc-- -3'
miRNA:   3'- -AGUUGaa--GCCGGC------------AGUCCGAGGUaag -5'
8082 5' -53.3 NC_001978.2 + 18764 0.66 0.70621
Target:  5'- cCGAaucCUUCaGCaCGUCGGGCagaCCGUUCg -3'
miRNA:   3'- aGUU---GAAGcCG-GCAGUCCGa--GGUAAG- -5'
8082 5' -53.3 NC_001978.2 + 31378 0.69 0.535858
Target:  5'- -gGGCUUCGGCCcau-GGCUCCGg-- -3'
miRNA:   3'- agUUGAAGCCGGcaguCCGAGGUaag -5'
8082 5' -53.3 NC_001978.2 + 7454 1.11 0.000737
Target:  5'- cUCAACUUCGGCCGUCAGGCUCCAUUCg -3'
miRNA:   3'- -AGUUGAAGCCGGCAGUCCGAGGUAAG- -5'
8082 5' -53.3 NC_001978.2 + 28621 0.73 0.319908
Target:  5'- aCGGCUUCGGCCaacggGUUAGGCUCacgcgccccgauaCGUUCc -3'
miRNA:   3'- aGUUGAAGCCGG-----CAGUCCGAG-------------GUAAG- -5'
8082 5' -53.3 NC_001978.2 + 26119 0.72 0.400653
Target:  5'- gCGACUUCGGCCuuaCGGuGCUCCGccUCa -3'
miRNA:   3'- aGUUGAAGCCGGca-GUC-CGAGGUa-AG- -5'
8082 5' -53.3 NC_001978.2 + 30560 0.71 0.410285
Target:  5'- cCGAcCUUCGggcgaaucucGCCGUCGGGCUCUucgUCg -3'
miRNA:   3'- aGUU-GAAGC----------CGGCAGUCCGAGGua-AG- -5'
8082 5' -53.3 NC_001978.2 + 16576 0.71 0.410285
Target:  5'- uUCggUUUaCGGUCGUC-GGCUCCGUg- -3'
miRNA:   3'- -AGuuGAA-GCCGGCAGuCCGAGGUAag -5'
8082 5' -53.3 NC_001978.2 + 21179 0.7 0.502951
Target:  5'- uUCAGCgcgUCGGCCGUCuucucGGCgucgCUcUUCu -3'
miRNA:   3'- -AGUUGa--AGCCGGCAGu----CCGa---GGuAAG- -5'
8082 5' -53.3 NC_001978.2 + 25057 0.7 0.502951
Target:  5'- -gGGCUUCGGaCCGaaggUCAGcGC-CCAUUCg -3'
miRNA:   3'- agUUGAAGCC-GGC----AGUC-CGaGGUAAG- -5'
8082 5' -53.3 NC_001978.2 + 20446 0.68 0.602466
Target:  5'- cUCGACUUCGGCCuUCGccgcuucGGCUuCCGg-- -3'
miRNA:   3'- -AGUUGAAGCCGGcAGU-------CCGA-GGUaag -5'
8082 5' -53.3 NC_001978.2 + 36843 0.68 0.61505
Target:  5'- -aGGCUcCGGC--UCAGGCUCCGgcgUCg -3'
miRNA:   3'- agUUGAaGCCGgcAGUCCGAGGUa--AG- -5'
8082 5' -53.3 NC_001978.2 + 8192 0.67 0.683644
Target:  5'- cUCGACUUCGGgucgcggugaCCGUCcGGGCUUUcgUg -3'
miRNA:   3'- -AGUUGAAGCC----------GGCAG-UCCGAGGuaAg -5'
8082 5' -53.3 NC_001978.2 + 20403 0.66 0.716268
Target:  5'- gUCAGCUccgucucUCGcGCCGUgCGGGCUUCcUUg -3'
miRNA:   3'- -AGUUGA-------AGC-CGGCA-GUCCGAGGuAAg -5'
8082 5' -53.3 NC_001978.2 + 13286 0.66 0.750296
Target:  5'- gCGGCaaggUCGGCCGUCGuGG-UCCAc-- -3'
miRNA:   3'- aGUUGa---AGCCGGCAGU-CCgAGGUaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.