Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8083 | 5' | -54 | NC_001978.2 | + | 22881 | 0.68 | 0.603536 |
Target: 5'- gCGCGGGGAcGGCggCGuugUGGCCGUGC-Ca -3' miRNA: 3'- -GUGCCCUU-UCGa-GUu--GCCGGCAUGcG- -5' |
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8083 | 5' | -54 | NC_001978.2 | + | 18392 | 0.68 | 0.603536 |
Target: 5'- -uCGGGuGAGCcuucgcccaacUCAacGCGGCgCGUGCGUa -3' miRNA: 3'- guGCCCuUUCG-----------AGU--UGCCG-GCAUGCG- -5' |
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8083 | 5' | -54 | NC_001978.2 | + | 22149 | 0.68 | 0.614789 |
Target: 5'- uCACcccGGAucaggcGCUCAAacaGGUCGUGCGCu -3' miRNA: 3'- -GUGc--CCUuu----CGAGUUg--CCGGCAUGCG- -5' |
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8083 | 5' | -54 | NC_001978.2 | + | 11785 | 0.68 | 0.581118 |
Target: 5'- cCACGGGGAAGCcgcauccgugaUCAcgauggaaggGCGaGCCGcaACGCu -3' miRNA: 3'- -GUGCCCUUUCG-----------AGU----------UGC-CGGCa-UGCG- -5' |
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8083 | 5' | -54 | NC_001978.2 | + | 39838 | 0.68 | 0.592309 |
Target: 5'- cCGCGcGGcAGGCgcguaCGACGGacCCGUugGCa -3' miRNA: 3'- -GUGC-CCuUUCGa----GUUGCC--GGCAugCG- -5' |
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8083 | 5' | -54 | NC_001978.2 | + | 19585 | 0.67 | 0.626057 |
Target: 5'- gACGGGc-AGCgCAACGGCaCGUuCGUu -3' miRNA: 3'- gUGCCCuuUCGaGUUGCCG-GCAuGCG- -5' |
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8083 | 5' | -54 | NC_001978.2 | + | 38910 | 0.67 | 0.626057 |
Target: 5'- gGCGGGAAGGCgcuuACGGCUucgaGCu -3' miRNA: 3'- gUGCCCUUUCGagu-UGCCGGcaugCG- -5' |
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8083 | 5' | -54 | NC_001978.2 | + | 9450 | 0.67 | 0.637331 |
Target: 5'- --aGGGAAucgGGCUCGACGGUaagACGg -3' miRNA: 3'- gugCCCUU---UCGAGUUGCCGgcaUGCg -5' |
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8083 | 5' | -54 | NC_001978.2 | + | 41409 | 0.67 | 0.647474 |
Target: 5'- gGCGGGgcGGCUCcgaaguuGGCGGCgUGUGCc- -3' miRNA: 3'- gUGCCCuuUCGAG-------UUGCCG-GCAUGcg -5' |
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8083 | 5' | -54 | NC_001978.2 | + | 12159 | 0.67 | 0.6486 |
Target: 5'- -uCGGGGGcacGGCUgGggGCGGCaCGUGgGCa -3' miRNA: 3'- guGCCCUU---UCGAgU--UGCCG-GCAUgCG- -5' |
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8083 | 5' | -54 | NC_001978.2 | + | 2332 | 0.67 | 0.659853 |
Target: 5'- gCACuGGGAAGCUC--CGGCgGaugACGCc -3' miRNA: 3'- -GUGcCCUUUCGAGuuGCCGgCa--UGCG- -5' |
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8083 | 5' | -54 | NC_001978.2 | + | 8210 | 0.67 | 0.659853 |
Target: 5'- gGCGccgucaucaaGGcAGGCUCAGCGgcucgcguGCCGUAUGCc -3' miRNA: 3'- gUGC----------CCuUUCGAGUUGC--------CGGCAUGCG- -5' |
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8083 | 5' | -54 | NC_001978.2 | + | 4188 | 0.67 | 0.626057 |
Target: 5'- aGCGGGGgcAGGCUCAGgcucCGGCUcuuCGCc -3' miRNA: 3'- gUGCCCU--UUCGAGUU----GCCGGcauGCG- -5' |
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8083 | 5' | -54 | NC_001978.2 | + | 18331 | 0.67 | 0.659853 |
Target: 5'- gUugGGcGAAGGCUCAcccgaaGGUCGUcACGUc -3' miRNA: 3'- -GugCC-CUUUCGAGUug----CCGGCA-UGCG- -5' |
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8083 | 5' | -54 | NC_001978.2 | + | 14484 | 0.67 | 0.658729 |
Target: 5'- aACGGGAuuccaugAAGC-CAACGGaCGUaaaccgugcccaGCGCg -3' miRNA: 3'- gUGCCCU-------UUCGaGUUGCCgGCA------------UGCG- -5' |
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8083 | 5' | -54 | NC_001978.2 | + | 33092 | 0.67 | 0.671079 |
Target: 5'- uCGCGGGcuuGCUUc-CGGCCGUA-GCc -3' miRNA: 3'- -GUGCCCuuuCGAGuuGCCGGCAUgCG- -5' |
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8083 | 5' | -54 | NC_001978.2 | + | 18912 | 0.67 | 0.653104 |
Target: 5'- gACGGGcAGGCUCAggcgcuccgcaGCGucgauagcggggaacGCCGcGCGCa -3' miRNA: 3'- gUGCCCuUUCGAGU-----------UGC---------------CGGCaUGCG- -5' |
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8083 | 5' | -54 | NC_001978.2 | + | 32283 | 0.66 | 0.693405 |
Target: 5'- gCGCGcuGccGCUCAGCcucaGCCGUGCGCc -3' miRNA: 3'- -GUGCccUuuCGAGUUGc---CGGCAUGCG- -5' |
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8083 | 5' | -54 | NC_001978.2 | + | 25982 | 0.66 | 0.693405 |
Target: 5'- aACGGGcacGUUCAGCG--CGUACGCg -3' miRNA: 3'- gUGCCCuuuCGAGUUGCcgGCAUGCG- -5' |
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8083 | 5' | -54 | NC_001978.2 | + | 23595 | 0.66 | 0.70448 |
Target: 5'- uCACGGuGAuugccGGGUUCGGCGcGUCGUACu- -3' miRNA: 3'- -GUGCC-CU-----UUCGAGUUGC-CGGCAUGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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