Results 21 - 40 of 45 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8083 | 5' | -54 | NC_001978.2 | + | 22149 | 0.68 | 0.614789 |
Target: 5'- uCACcccGGAucaggcGCUCAAacaGGUCGUGCGCu -3' miRNA: 3'- -GUGc--CCUuu----CGAGUUg--CCGGCAUGCG- -5' |
|||||||
8083 | 5' | -54 | NC_001978.2 | + | 18392 | 0.68 | 0.603536 |
Target: 5'- -uCGGGuGAGCcuucgcccaacUCAacGCGGCgCGUGCGUa -3' miRNA: 3'- guGCCCuUUCG-----------AGU--UGCCG-GCAUGCG- -5' |
|||||||
8083 | 5' | -54 | NC_001978.2 | + | 22881 | 0.68 | 0.603536 |
Target: 5'- gCGCGGGGAcGGCggCGuugUGGCCGUGC-Ca -3' miRNA: 3'- -GUGCCCUU-UCGa-GUu--GCCGGCAUGcG- -5' |
|||||||
8083 | 5' | -54 | NC_001978.2 | + | 39838 | 0.68 | 0.592309 |
Target: 5'- cCGCGcGGcAGGCgcguaCGACGGacCCGUugGCa -3' miRNA: 3'- -GUGC-CCuUUCGa----GUUGCC--GGCAugCG- -5' |
|||||||
8083 | 5' | -54 | NC_001978.2 | + | 11785 | 0.68 | 0.581118 |
Target: 5'- cCACGGGGAAGCcgcauccgugaUCAcgauggaaggGCGaGCCGcaACGCu -3' miRNA: 3'- -GUGCCCUUUCG-----------AGU----------UGC-CGGCa-UGCG- -5' |
|||||||
8083 | 5' | -54 | NC_001978.2 | + | 23989 | 0.69 | 0.558877 |
Target: 5'- aAUGGGAAAGCgcggAACGGUCacugacUACGCg -3' miRNA: 3'- gUGCCCUUUCGag--UUGCCGGc-----AUGCG- -5' |
|||||||
8083 | 5' | -54 | NC_001978.2 | + | 29150 | 0.69 | 0.55225 |
Target: 5'- uCACGGGucggcgccugccGCUCGAcCGGaaCCGUACGUa -3' miRNA: 3'- -GUGCCCuuu---------CGAGUU-GCC--GGCAUGCG- -5' |
|||||||
8083 | 5' | -54 | NC_001978.2 | + | 22100 | 0.69 | 0.547845 |
Target: 5'- -cCGGGGuGAGUaCGuCGGCCGUguGCGCg -3' miRNA: 3'- guGCCCU-UUCGaGUuGCCGGCA--UGCG- -5' |
|||||||
8083 | 5' | -54 | NC_001978.2 | + | 32215 | 0.69 | 0.515195 |
Target: 5'- gCACGGcuGAGGCUgAGCGGCa--GCGCg -3' miRNA: 3'- -GUGCCc-UUUCGAgUUGCCGgcaUGCG- -5' |
|||||||
8083 | 5' | -54 | NC_001978.2 | + | 24368 | 0.7 | 0.504484 |
Target: 5'- aUACGGGAuuGUUCAuCGGgcCCG-ACGCu -3' miRNA: 3'- -GUGCCCUuuCGAGUuGCC--GGCaUGCG- -5' |
|||||||
8083 | 5' | -54 | NC_001978.2 | + | 8498 | 0.7 | 0.462672 |
Target: 5'- uCACGGGucagccGCUCGACucccugaacaaGGCCGguuCGCg -3' miRNA: 3'- -GUGCCCuuu---CGAGUUG-----------CCGGCau-GCG- -5' |
|||||||
8083 | 5' | -54 | NC_001978.2 | + | 2909 | 0.7 | 0.452503 |
Target: 5'- gGCGGGGGcacuccccagcGCUCGACGGCauugagGCGCg -3' miRNA: 3'- gUGCCCUUu----------CGAGUUGCCGgca---UGCG- -5' |
|||||||
8083 | 5' | -54 | NC_001978.2 | + | 30620 | 0.71 | 0.421781 |
Target: 5'- uCACGGGGAAcggacacguaccGCUCAagcacguagGCGGCUucgaugaGUGCGCc -3' miRNA: 3'- -GUGCCCUUU------------CGAGU---------UGCCGG-------CAUGCG- -5' |
|||||||
8083 | 5' | -54 | NC_001978.2 | + | 38229 | 0.72 | 0.384973 |
Target: 5'- gCACGGGGAAGCcgcgccacgccuUCGggacgucaGCGGCucgcccCGUGCGCu -3' miRNA: 3'- -GUGCCCUUUCG------------AGU--------UGCCG------GCAUGCG- -5' |
|||||||
8083 | 5' | -54 | NC_001978.2 | + | 30223 | 0.72 | 0.36694 |
Target: 5'- uGCGGGaAGAGCgCAACGGCa--ACGCc -3' miRNA: 3'- gUGCCC-UUUCGaGUUGCCGgcaUGCG- -5' |
|||||||
8083 | 5' | -54 | NC_001978.2 | + | 12844 | 0.73 | 0.340998 |
Target: 5'- gGCGGGu-GGCgu--CGGCCGUAuCGCg -3' miRNA: 3'- gUGCCCuuUCGaguuGCCGGCAU-GCG- -5' |
|||||||
8083 | 5' | -54 | NC_001978.2 | + | 15395 | 0.73 | 0.324455 |
Target: 5'- aGCGGGAAGacgaacGC-CGACGuuGCCGUugGCg -3' miRNA: 3'- gUGCCCUUU------CGaGUUGC--CGGCAugCG- -5' |
|||||||
8083 | 5' | -54 | NC_001978.2 | + | 14501 | 0.74 | 0.293182 |
Target: 5'- -cCGGGAAGGCcCGAC-GCCGgACGCg -3' miRNA: 3'- guGCCCUUUCGaGUUGcCGGCaUGCG- -5' |
|||||||
8083 | 5' | -54 | NC_001978.2 | + | 20947 | 0.74 | 0.27845 |
Target: 5'- aGCGGGGAAGCUCGAuucccugccCGG-CGUACaGCc -3' miRNA: 3'- gUGCCCUUUCGAGUU---------GCCgGCAUG-CG- -5' |
|||||||
8083 | 5' | -54 | NC_001978.2 | + | 15648 | 0.75 | 0.257466 |
Target: 5'- gGCGGcuucgcuGGGGCUCGACGGCgacaCGUACGCc -3' miRNA: 3'- gUGCCc------UUUCGAGUUGCCG----GCAUGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home