Results 1 - 11 of 11 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8084 | 3' | -55.8 | NC_001978.2 | + | 33792 | 0.66 | 0.569971 |
Target: 5'- -gCUGGGCgcUCGACGUcgaACcUGAGUUUGu -3' miRNA: 3'- aaGGCCCG--AGCUGCA---UGcACUCGAAC- -5' |
|||||||
8084 | 3' | -55.8 | NC_001978.2 | + | 6831 | 0.66 | 0.569971 |
Target: 5'- gUCCcgGGGCUCaugGACGUACGgccgGAGUc-- -3' miRNA: 3'- aAGG--CCCGAG---CUGCAUGCa---CUCGaac -5' |
|||||||
8084 | 3' | -55.8 | NC_001978.2 | + | 26134 | 0.66 | 0.603536 |
Target: 5'- aUCCuGGGCgaccuugugUCGACGUACGgcgaGAGUg-- -3' miRNA: 3'- aAGG-CCCG---------AGCUGCAUGCa---CUCGaac -5' |
|||||||
8084 | 3' | -55.8 | NC_001978.2 | + | 28169 | 0.67 | 0.53579 |
Target: 5'- -gCCGGGCUCGACGUgaucuauACG-GcGCg-- -3' miRNA: 3'- aaGGCCCGAGCUGCA-------UGCaCuCGaac -5' |
|||||||
8084 | 3' | -55.8 | NC_001978.2 | + | 38579 | 0.67 | 0.536882 |
Target: 5'- -gCCGGGCacgUCGGCGUucgggACGgcgGAGCg-- -3' miRNA: 3'- aaGGCCCG---AGCUGCA-----UGCa--CUCGaac -5' |
|||||||
8084 | 3' | -55.8 | NC_001978.2 | + | 23621 | 0.67 | 0.493871 |
Target: 5'- cUCCGGGUcgUCGGCGaGCGUGAa---- -3' miRNA: 3'- aAGGCCCG--AGCUGCaUGCACUcgaac -5' |
|||||||
8084 | 3' | -55.8 | NC_001978.2 | + | 17595 | 0.67 | 0.536882 |
Target: 5'- gUCCGGG-UCGGCGgagACG-GAGCc-- -3' miRNA: 3'- aAGGCCCgAGCUGCa--UGCaCUCGaac -5' |
|||||||
8084 | 3' | -55.8 | NC_001978.2 | + | 25940 | 0.68 | 0.470893 |
Target: 5'- gUUCCGGGUaCGACcuuacugacugGCGUGAGCg-- -3' miRNA: 3'- -AAGGCCCGaGCUGca---------UGCACUCGaac -5' |
|||||||
8084 | 3' | -55.8 | NC_001978.2 | + | 9455 | 0.72 | 0.250764 |
Target: 5'- -aUCGGGCUCGACGguaagACGgcaaugGGGCUUc -3' miRNA: 3'- aaGGCCCGAGCUGCa----UGCa-----CUCGAAc -5' |
|||||||
8084 | 3' | -55.8 | NC_001978.2 | + | 25426 | 0.73 | 0.218802 |
Target: 5'- gUUCGGGCUCGACGUcgcccaggcugagGCGcugGGGCUUc -3' miRNA: 3'- aAGGCCCGAGCUGCA-------------UGCa--CUCGAAc -5' |
|||||||
8084 | 3' | -55.8 | NC_001978.2 | + | 7992 | 1.06 | 0.00088 |
Target: 5'- gUUCCGGGCUCGACGUACGUGAGCUUGa -3' miRNA: 3'- -AAGGCCCGAGCUGCAUGCACUCGAAC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home