miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8084 5' -61.6 NC_001978.2 + 40776 0.68 0.261395
Target:  5'- -cCGCGuUCGgCGUCauugaGGGUCGAGCGCu -3'
miRNA:   3'- caGUGC-GGCaGCGGg----CCCAGCUCGUG- -5'
8084 5' -61.6 NC_001978.2 + 39562 0.66 0.324977
Target:  5'- -cCGCuGCCGUCGCCgGaagguGGUCGAcccguccGCACc -3'
miRNA:   3'- caGUG-CGGCAGCGGgC-----CCAGCU-------CGUG- -5'
8084 5' -61.6 NC_001978.2 + 39239 0.67 0.30307
Target:  5'- -cCAauCGUC-UCGcCCCGGGUCG-GCACg -3'
miRNA:   3'- caGU--GCGGcAGC-GGGCCCAGCuCGUG- -5'
8084 5' -61.6 NC_001978.2 + 39167 0.66 0.341562
Target:  5'- --gACGCCGUgcCGaCCCGGGgCGAG-ACg -3'
miRNA:   3'- cagUGCGGCA--GC-GGGCCCaGCUCgUG- -5'
8084 5' -61.6 NC_001978.2 + 38096 0.67 0.30307
Target:  5'- cUCGcCGUCGUCGuCCUGGGgc-AGCGCg -3'
miRNA:   3'- cAGU-GCGGCAGC-GGGCCCagcUCGUG- -5'
8084 5' -61.6 NC_001978.2 + 37949 0.67 0.274745
Target:  5'- --aGCGCCGgaaaaaCGgaaCCUGGGUCGuGCGCa -3'
miRNA:   3'- cagUGCGGCa-----GC---GGGCCCAGCuCGUG- -5'
8084 5' -61.6 NC_001978.2 + 37302 0.66 0.309745
Target:  5'- --aGCGCCGUcCGCCCGaugccuaGGUCuucGCACa -3'
miRNA:   3'- cagUGCGGCA-GCGGGC-------CCAGcu-CGUG- -5'
8084 5' -61.6 NC_001978.2 + 36071 0.66 0.333589
Target:  5'- uGUCGCaCacaaCGCCCGGGUCGgcGGCAg -3'
miRNA:   3'- -CAGUGcGgca-GCGGGCCCAGC--UCGUg -5'
8084 5' -61.6 NC_001978.2 + 35754 0.69 0.218807
Target:  5'- --aACGCCGUCGCCCaGcUCGAcCACu -3'
miRNA:   3'- cagUGCGGCAGCGGGcCcAGCUcGUG- -5'
8084 5' -61.6 NC_001978.2 + 35380 0.68 0.224507
Target:  5'- --aGCGCCGUCG-CUGGGUgGAcGUACu -3'
miRNA:   3'- cagUGCGGCAGCgGGCCCAgCU-CGUG- -5'
8084 5' -61.6 NC_001978.2 + 33899 0.73 0.106104
Target:  5'- --aACGCCGUCgGCCCGacaGUCGAGCGa -3'
miRNA:   3'- cagUGCGGCAG-CGGGCc--CAGCUCGUg -5'
8084 5' -61.6 NC_001978.2 + 32176 0.66 0.333589
Target:  5'- -aCGCGCCugaGCCgGGGUCaucacGGCACg -3'
miRNA:   3'- caGUGCGGcagCGGgCCCAGc----UCGUG- -5'
8084 5' -61.6 NC_001978.2 + 31484 0.68 0.236286
Target:  5'- -gCACGCUuUCGCgucCCGGGUUGcGGCGCu -3'
miRNA:   3'- caGUGCGGcAGCG---GGCCCAGC-UCGUG- -5'
8084 5' -61.6 NC_001978.2 + 30691 0.66 0.341562
Target:  5'- cGUC-CGCCGgagucgucUCGCCCuGGGUgGcaagcucaAGCGCa -3'
miRNA:   3'- -CAGuGCGGC--------AGCGGG-CCCAgC--------UCGUG- -5'
8084 5' -61.6 NC_001978.2 + 30371 0.67 0.288634
Target:  5'- -aCGCGCCGaagcCGCCCGGcUCGcguGGCAg -3'
miRNA:   3'- caGUGCGGCa---GCGGGCCcAGC---UCGUg -5'
8084 5' -61.6 NC_001978.2 + 27311 0.69 0.197231
Target:  5'- cGUCggcaGCGUCGagcaCGCCCGGGaagaaaccggCGAGCGCa -3'
miRNA:   3'- -CAG----UGCGGCa---GCGGGCCCa---------GCUCGUG- -5'
8084 5' -61.6 NC_001978.2 + 26303 0.68 0.230333
Target:  5'- gGUCACGCCGUCccacacgaaguaGCCCaGGcCGGaCGCg -3'
miRNA:   3'- -CAGUGCGGCAG------------CGGGcCCaGCUcGUG- -5'
8084 5' -61.6 NC_001978.2 + 26073 0.68 0.224507
Target:  5'- aGUCGCGCacCGUaccggCGCCguucaGGuGUCGAGCACu -3'
miRNA:   3'- -CAGUGCG--GCA-----GCGGg----CC-CAGCUCGUG- -5'
8084 5' -61.6 NC_001978.2 + 26012 0.67 0.267336
Target:  5'- cUCACGCCagucaguaaggucGUCaCCCGGaaCGGGCACg -3'
miRNA:   3'- cAGUGCGG-------------CAGcGGGCCcaGCUCGUG- -5'
8084 5' -61.6 NC_001978.2 + 25874 0.67 0.274064
Target:  5'- uUCACGCUG-CGCCUgagcgaaGGGcuugcCGGGCACg -3'
miRNA:   3'- cAGUGCGGCaGCGGG-------CCCa----GCUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.