Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8084 | 5' | -61.6 | NC_001978.2 | + | 24469 | 0.66 | 0.349673 |
Target: 5'- uUCAgcgcuCGCaCGUCGCCCaGGG-CaGGCGCa -3' miRNA: 3'- cAGU-----GCG-GCAGCGGG-CCCaGcUCGUG- -5' |
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8084 | 5' | -61.6 | NC_001978.2 | + | 26303 | 0.68 | 0.230333 |
Target: 5'- gGUCACGCCGUCccacacgaaguaGCCCaGGcCGGaCGCg -3' miRNA: 3'- -CAGUGCGGCAG------------CGGGcCCaGCUcGUG- -5' |
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8084 | 5' | -61.6 | NC_001978.2 | + | 17507 | 0.68 | 0.224507 |
Target: 5'- -aCACGCCGUCGCCC---UC-AGCGCu -3' miRNA: 3'- caGUGCGGCAGCGGGcccAGcUCGUG- -5' |
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8084 | 5' | -61.6 | NC_001978.2 | + | 7957 | 1.09 | 0.000166 |
Target: 5'- cGUCACGCCGUCGCCCGGGUCGAGCACa -3' miRNA: 3'- -CAGUGCGGCAGCGGGCCCAGCUCGUG- -5' |
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8084 | 5' | -61.6 | NC_001978.2 | + | 10355 | 0.66 | 0.325753 |
Target: 5'- -cCACGCCGcCGCCau--UCGGGCGCc -3' miRNA: 3'- caGUGCGGCaGCGGgcccAGCUCGUG- -5' |
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8084 | 5' | -61.6 | NC_001978.2 | + | 5132 | 0.66 | 0.310493 |
Target: 5'- cGUCacaGCGuCCGUCGCCUuaauGGcGUCGAuaccGCGCu -3' miRNA: 3'- -CAG---UGC-GGCAGCGGG----CC-CAGCU----CGUG- -5' |
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8084 | 5' | -61.6 | NC_001978.2 | + | 38096 | 0.67 | 0.30307 |
Target: 5'- cUCGcCGUCGUCGuCCUGGGgc-AGCGCg -3' miRNA: 3'- cAGU-GCGGCAGC-GGGCCCagcUCGUG- -5' |
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8084 | 5' | -61.6 | NC_001978.2 | + | 39239 | 0.67 | 0.30307 |
Target: 5'- -cCAauCGUC-UCGcCCCGGGUCG-GCACg -3' miRNA: 3'- caGU--GCGGcAGC-GGGCCCAGCuCGUG- -5' |
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8084 | 5' | -61.6 | NC_001978.2 | + | 26012 | 0.67 | 0.267336 |
Target: 5'- cUCACGCCagucaguaaggucGUCaCCCGGaaCGGGCACg -3' miRNA: 3'- cAGUGCGG-------------CAGcGGGCCcaGCUCGUG- -5' |
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8084 | 5' | -61.6 | NC_001978.2 | + | 31484 | 0.68 | 0.236286 |
Target: 5'- -gCACGCUuUCGCgucCCGGGUUGcGGCGCu -3' miRNA: 3'- caGUGCGGcAGCG---GGCCCAGC-UCGUG- -5' |
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8084 | 5' | -61.6 | NC_001978.2 | + | 19427 | 0.68 | 0.261395 |
Target: 5'- cGUCACGUCGgCGUCCgucGGGaCGuAGCGCu -3' miRNA: 3'- -CAGUGCGGCaGCGGG---CCCaGC-UCGUG- -5' |
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8084 | 5' | -61.6 | NC_001978.2 | + | 15006 | 0.67 | 0.274745 |
Target: 5'- cGUCGCGCCauacGUUGCCCGuGcCGGuacGCACg -3' miRNA: 3'- -CAGUGCGG----CAGCGGGCcCaGCU---CGUG- -5' |
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8084 | 5' | -61.6 | NC_001978.2 | + | 30691 | 0.66 | 0.341562 |
Target: 5'- cGUC-CGCCGgagucgucUCGCCCuGGGUgGcaagcucaAGCGCa -3' miRNA: 3'- -CAGuGCGGC--------AGCGGG-CCCAgC--------UCGUG- -5' |
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8084 | 5' | -61.6 | NC_001978.2 | + | 19015 | 0.68 | 0.248579 |
Target: 5'- -gCGCGuCCGgcuucagCGUgCCGGGUCGAGuCACc -3' miRNA: 3'- caGUGC-GGCa------GCG-GGCCCAGCUC-GUG- -5' |
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8084 | 5' | -61.6 | NC_001978.2 | + | 32176 | 0.66 | 0.333589 |
Target: 5'- -aCGCGCCugaGCCgGGGUCaucacGGCACg -3' miRNA: 3'- caGUGCGGcagCGGgCCCAGc----UCGUG- -5' |
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8084 | 5' | -61.6 | NC_001978.2 | + | 12952 | 0.67 | 0.274745 |
Target: 5'- aUCACGCCGUCGCacCCGuacucaaUCGAGCcCg -3' miRNA: 3'- cAGUGCGGCAGCG--GGCcc-----AGCUCGuG- -5' |
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8084 | 5' | -61.6 | NC_001978.2 | + | 11074 | 0.68 | 0.242368 |
Target: 5'- uUCGCGCCcaaUCGCgaaCGGGUCGGcguucgucuGCACg -3' miRNA: 3'- cAGUGCGGc--AGCGg--GCCCAGCU---------CGUG- -5' |
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8084 | 5' | -61.6 | NC_001978.2 | + | 35380 | 0.68 | 0.224507 |
Target: 5'- --aGCGCCGUCG-CUGGGUgGAcGUACu -3' miRNA: 3'- cagUGCGGCAGCgGGCCCAgCU-CGUG- -5' |
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8084 | 5' | -61.6 | NC_001978.2 | + | 36071 | 0.66 | 0.333589 |
Target: 5'- uGUCGCaCacaaCGCCCGGGUCGgcGGCAg -3' miRNA: 3'- -CAGUGcGgca-GCGGGCCCAGC--UCGUg -5' |
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8084 | 5' | -61.6 | NC_001978.2 | + | 37302 | 0.66 | 0.309745 |
Target: 5'- --aGCGCCGUcCGCCCGaugccuaGGUCuucGCACa -3' miRNA: 3'- cagUGCGGCA-GCGGGC-------CCAGcu-CGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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