miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8084 5' -61.6 NC_001978.2 + 25874 0.67 0.274064
Target:  5'- uUCACGCUG-CGCCUgagcgaaGGGcuugcCGGGCACg -3'
miRNA:   3'- cAGUGCGGCaGCGGG-------CCCa----GCUCGUG- -5'
8084 5' -61.6 NC_001978.2 + 26012 0.67 0.267336
Target:  5'- cUCACGCCagucaguaaggucGUCaCCCGGaaCGGGCACg -3'
miRNA:   3'- cAGUGCGG-------------CAGcGGGCCcaGCUCGUG- -5'
8084 5' -61.6 NC_001978.2 + 15994 0.68 0.261395
Target:  5'- cGUCGCGCCcguGUCGCCCuuGUCGcccuucGCGCc -3'
miRNA:   3'- -CAGUGCGG---CAGCGGGccCAGCu-----CGUG- -5'
8084 5' -61.6 NC_001978.2 + 19427 0.68 0.261395
Target:  5'- cGUCACGUCGgCGUCCgucGGGaCGuAGCGCu -3'
miRNA:   3'- -CAGUGCGGCaGCGGG---CCCaGC-UCGUG- -5'
8084 5' -61.6 NC_001978.2 + 19015 0.68 0.248579
Target:  5'- -gCGCGuCCGgcuucagCGUgCCGGGUCGAGuCACc -3'
miRNA:   3'- caGUGC-GGCa------GCG-GGCCCAGCUC-GUG- -5'
8084 5' -61.6 NC_001978.2 + 11074 0.68 0.242368
Target:  5'- uUCGCGCCcaaUCGCgaaCGGGUCGGcguucgucuGCACg -3'
miRNA:   3'- cAGUGCGGc--AGCGg--GCCCAGCU---------CGUG- -5'
8084 5' -61.6 NC_001978.2 + 31484 0.68 0.236286
Target:  5'- -gCACGCUuUCGCgucCCGGGUUGcGGCGCu -3'
miRNA:   3'- caGUGCGGcAGCG---GGCCCAGC-UCGUG- -5'
8084 5' -61.6 NC_001978.2 + 26303 0.68 0.230333
Target:  5'- gGUCACGCCGUCccacacgaaguaGCCCaGGcCGGaCGCg -3'
miRNA:   3'- -CAGUGCGGCAG------------CGGGcCCaGCUcGUG- -5'
8084 5' -61.6 NC_001978.2 + 35380 0.68 0.224507
Target:  5'- --aGCGCCGUCG-CUGGGUgGAcGUACu -3'
miRNA:   3'- cagUGCGGCAGCgGGCCCAgCU-CGUG- -5'
8084 5' -61.6 NC_001978.2 + 15006 0.67 0.274745
Target:  5'- cGUCGCGCCauacGUUGCCCGuGcCGGuacGCACg -3'
miRNA:   3'- -CAGUGCGG----CAGCGGGCcCaGCU---CGUG- -5'
8084 5' -61.6 NC_001978.2 + 12952 0.67 0.274745
Target:  5'- aUCACGCCGUCGCacCCGuacucaaUCGAGCcCg -3'
miRNA:   3'- cAGUGCGGCAGCG--GGCcc-----AGCUCGuG- -5'
8084 5' -61.6 NC_001978.2 + 39239 0.67 0.30307
Target:  5'- -cCAauCGUC-UCGcCCCGGGUCG-GCACg -3'
miRNA:   3'- caGU--GCGGcAGC-GGGCCCAGCuCGUG- -5'
8084 5' -61.6 NC_001978.2 + 7957 1.09 0.000166
Target:  5'- cGUCACGCCGUCGCCCGGGUCGAGCACa -3'
miRNA:   3'- -CAGUGCGGCAGCGGGCCCAGCUCGUG- -5'
8084 5' -61.6 NC_001978.2 + 30691 0.66 0.341562
Target:  5'- cGUC-CGCCGgagucgucUCGCCCuGGGUgGcaagcucaAGCGCa -3'
miRNA:   3'- -CAGuGCGGC--------AGCGGG-CCCAgC--------UCGUG- -5'
8084 5' -61.6 NC_001978.2 + 32176 0.66 0.333589
Target:  5'- -aCGCGCCugaGCCgGGGUCaucacGGCACg -3'
miRNA:   3'- caGUGCGGcagCGGgCCCAGc----UCGUG- -5'
8084 5' -61.6 NC_001978.2 + 36071 0.66 0.333589
Target:  5'- uGUCGCaCacaaCGCCCGGGUCGgcGGCAg -3'
miRNA:   3'- -CAGUGcGgca-GCGGGCCCAGC--UCGUg -5'
8084 5' -61.6 NC_001978.2 + 10355 0.66 0.325753
Target:  5'- -cCACGCCGcCGCCau--UCGGGCGCc -3'
miRNA:   3'- caGUGCGGCaGCGGgcccAGCUCGUG- -5'
8084 5' -61.6 NC_001978.2 + 5132 0.66 0.310493
Target:  5'- cGUCacaGCGuCCGUCGCCUuaauGGcGUCGAuaccGCGCu -3'
miRNA:   3'- -CAG---UGC-GGCAGCGGG----CC-CAGCU----CGUG- -5'
8084 5' -61.6 NC_001978.2 + 37302 0.66 0.309745
Target:  5'- --aGCGCCGUcCGCCCGaugccuaGGUCuucGCACa -3'
miRNA:   3'- cagUGCGGCA-GCGGGC-------CCAGcu-CGUG- -5'
8084 5' -61.6 NC_001978.2 + 38096 0.67 0.30307
Target:  5'- cUCGcCGUCGUCGuCCUGGGgc-AGCGCg -3'
miRNA:   3'- cAGU-GCGGCAGC-GGGCCCagcUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.