miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8085 3' -57.9 NC_001978.2 + 18816 0.66 0.475821
Target:  5'- uGG-GUGCGCGCGgCGUUCCccGCUa--- -3'
miRNA:   3'- gCCuCGCGCGCGU-GCAAGG--CGAcuuu -5'
8085 3' -57.9 NC_001978.2 + 34152 0.66 0.451561
Target:  5'- cCGGAGCGUGCcCACGUgggcaacugagcgCCGUcGAGu -3'
miRNA:   3'- -GCCUCGCGCGcGUGCAa------------GGCGaCUUu -5'
8085 3' -57.9 NC_001978.2 + 31126 0.67 0.406104
Target:  5'- cCGGGGCGgaGCugaccacGCACGUUCCGCc---- -3'
miRNA:   3'- -GCCUCGCg-CG-------CGUGCAAGGCGacuuu -5'
8085 3' -57.9 NC_001978.2 + 38132 0.67 0.397732
Target:  5'- gGGAGCGCaCgGgGCGagCCGCUGAc- -3'
miRNA:   3'- gCCUCGCGcG-CgUGCaaGGCGACUuu -5'
8085 3' -57.9 NC_001978.2 + 32187 0.69 0.289762
Target:  5'- aCGGA-CGCGCGCA----CCGCUGAGGg -3'
miRNA:   3'- -GCCUcGCGCGCGUgcaaGGCGACUUU- -5'
8085 3' -57.9 NC_001978.2 + 32351 0.69 0.289762
Target:  5'- aGGcacGGCGCGUGaACGUccgUCCGCUGGGc -3'
miRNA:   3'- gCC---UCGCGCGCgUGCA---AGGCGACUUu -5'
8085 3' -57.9 NC_001978.2 + 4918 0.7 0.268358
Target:  5'- uGaGGCGCGCGaGCGUgcgaCCGCUGAGc -3'
miRNA:   3'- gCcUCGCGCGCgUGCAa---GGCGACUUu -5'
8085 3' -57.9 NC_001978.2 + 25525 0.71 0.223394
Target:  5'- cCGGuuCcCGCGCAugguCGUUCCGCUGAAGg -3'
miRNA:   3'- -GCCucGcGCGCGU----GCAAGGCGACUUU- -5'
8085 3' -57.9 NC_001978.2 + 2641 0.71 0.219853
Target:  5'- cCGGGGCGCGCGCaucacgaaggaacacGCGUcgUCGCgccgGAAGa -3'
miRNA:   3'- -GCCUCGCGCGCG---------------UGCAa-GGCGa---CUUU- -5'
8085 3' -57.9 NC_001978.2 + 8020 0.72 0.195331
Target:  5'- gCGGAaCGUGCGCGCGcUCCGCgacaagGAAu -3'
miRNA:   3'- -GCCUcGCGCGCGUGCaAGGCGa-----CUUu -5'
8085 3' -57.9 NC_001978.2 + 8082 1.06 0.000613
Target:  5'- gCGGAGCGCGCGCACGUUCCGCUGAAAc -3'
miRNA:   3'- -GCCUCGCGCGCGUGCAAGGCGACUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.