miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8086 3' -58 NC_001978.2 + 29172 0.66 0.519993
Target:  5'- cCGUGCCGCGCGCuUCaCGcuGCCaACG-CGa -3'
miRNA:   3'- -GUACGGCGCGUGcAG-GC--UGG-UGCaGU- -5'
8086 3' -58 NC_001978.2 + 12388 0.66 0.509509
Target:  5'- uGUGCCGaagGCGU-CGACCACGUUc -3'
miRNA:   3'- gUACGGCgcgUGCAgGCUGGUGCAGu -5'
8086 3' -58 NC_001978.2 + 6805 0.66 0.509509
Target:  5'- -cUGCCGUGaACG-CCGACCuugUGUCGg -3'
miRNA:   3'- guACGGCGCgUGCaGGCUGGu--GCAGU- -5'
8086 3' -58 NC_001978.2 + 14575 0.66 0.509509
Target:  5'- gGUGaUUGUGCGCGUCCGGCguCGg-- -3'
miRNA:   3'- gUAC-GGCGCGUGCAGGCUGguGCagu -5'
8086 3' -58 NC_001978.2 + 26676 0.66 0.509509
Target:  5'- --aGCCGaCGCAUGUagCCGACaAgGUCAg -3'
miRNA:   3'- guaCGGC-GCGUGCA--GGCUGgUgCAGU- -5'
8086 3' -58 NC_001978.2 + 20536 0.66 0.499115
Target:  5'- --aGuuGgCGCACGUCaugcuGACCauGCGUCAg -3'
miRNA:   3'- guaCggC-GCGUGCAGg----CUGG--UGCAGU- -5'
8086 3' -58 NC_001978.2 + 26819 0.66 0.488817
Target:  5'- -uUGCCGCGCuucgugGUUCGcGCCuCGUCAu -3'
miRNA:   3'- guACGGCGCGug----CAGGC-UGGuGCAGU- -5'
8086 3' -58 NC_001978.2 + 10283 0.66 0.488817
Target:  5'- --cGCCGCGUugaGUCCGGCCugaACGcCc -3'
miRNA:   3'- guaCGGCGCGug-CAGGCUGG---UGCaGu -5'
8086 3' -58 NC_001978.2 + 26532 0.66 0.488817
Target:  5'- -uUGCC-CGUACGaggUCGACCACGcCGu -3'
miRNA:   3'- guACGGcGCGUGCa--GGCUGGUGCaGU- -5'
8086 3' -58 NC_001978.2 + 32847 0.66 0.488817
Target:  5'- gGUGaCCGaCGCAUGUUCGAgCACGc-- -3'
miRNA:   3'- gUAC-GGC-GCGUGCAGGCUgGUGCagu -5'
8086 3' -58 NC_001978.2 + 1364 0.66 0.478619
Target:  5'- uGUGCCGCGCAaucacgggguCGauUCCGgcccaguccGCCACGgUCAc -3'
miRNA:   3'- gUACGGCGCGU----------GC--AGGC---------UGGUGC-AGU- -5'
8086 3' -58 NC_001978.2 + 20404 0.67 0.458545
Target:  5'- --aGUCGCGC-CGgUCGGCCgACGUCGc -3'
miRNA:   3'- guaCGGCGCGuGCaGGCUGG-UGCAGU- -5'
8086 3' -58 NC_001978.2 + 32261 0.67 0.423588
Target:  5'- cCGUGCgccaucccucagcggUGCGCGCGUCCGucgauACC-CGUCc -3'
miRNA:   3'- -GUACG---------------GCGCGUGCAGGC-----UGGuGCAGu -5'
8086 3' -58 NC_001978.2 + 8680 0.67 0.419802
Target:  5'- -uUGCgUGCGCACGUCUGGUCA-GUCAc -3'
miRNA:   3'- guACG-GCGCGUGCAGGCUGGUgCAGU- -5'
8086 3' -58 NC_001978.2 + 2046 0.67 0.419802
Target:  5'- aCGUGUgGCGCGCGUgUaACC-CGUCGu -3'
miRNA:   3'- -GUACGgCGCGUGCAgGcUGGuGCAGU- -5'
8086 3' -58 NC_001978.2 + 32986 0.67 0.41043
Target:  5'- cCGUGCCGCgaauggcaggggGCACGaCCGGCuCAgUGUCGg -3'
miRNA:   3'- -GUACGGCG------------CGUGCaGGCUG-GU-GCAGU- -5'
8086 3' -58 NC_001978.2 + 9875 0.67 0.4095
Target:  5'- --cGCCGCGC-CGUC-GACCuugcccaGCGUCu -3'
miRNA:   3'- guaCGGCGCGuGCAGgCUGG-------UGCAGu -5'
8086 3' -58 NC_001978.2 + 33873 0.68 0.392081
Target:  5'- cCGUGCgCGUGUACG-CCGACgACGa-- -3'
miRNA:   3'- -GUACG-GCGCGUGCaGGCUGgUGCagu -5'
8086 3' -58 NC_001978.2 + 39300 0.68 0.365578
Target:  5'- --aGCCGgacgGCACG-CCGACCACGa-- -3'
miRNA:   3'- guaCGGCg---CGUGCaGGCUGGUGCagu -5'
8086 3' -58 NC_001978.2 + 25223 0.68 0.365578
Target:  5'- aCAUGCCGUGCcgguugugacACGggCGACguCGUCAg -3'
miRNA:   3'- -GUACGGCGCG----------UGCagGCUGguGCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.