Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8086 | 3' | -58 | NC_001978.2 | + | 8782 | 1.08 | 0.000458 |
Target: 5'- cCAUGCCGCGCACGUCCGACCACGUCAa -3' miRNA: 3'- -GUACGGCGCGUGCAGGCUGGUGCAGU- -5' |
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8086 | 3' | -58 | NC_001978.2 | + | 14228 | 0.77 | 0.091741 |
Target: 5'- cCAUGCCGCGCcCGauagCCGACCAC-UCGa -3' miRNA: 3'- -GUACGGCGCGuGCa---GGCUGGUGcAGU- -5' |
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8086 | 3' | -58 | NC_001978.2 | + | 12411 | 0.74 | 0.147783 |
Target: 5'- --cGCCGCGU-UGUCCGGCCGUGUCGg -3' miRNA: 3'- guaCGGCGCGuGCAGGCUGGUGCAGU- -5' |
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8086 | 3' | -58 | NC_001978.2 | + | 22271 | 0.72 | 0.227352 |
Target: 5'- --aGCCGUaCGUGUCCGACCACGcCAc -3' miRNA: 3'- guaCGGCGcGUGCAGGCUGGUGCaGU- -5' |
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8086 | 3' | -58 | NC_001978.2 | + | 39494 | 0.69 | 0.348609 |
Target: 5'- -uUGCCGCGCccccugcCGUCCaACCACGcCu -3' miRNA: 3'- guACGGCGCGu------GCAGGcUGGUGCaGu -5' |
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8086 | 3' | -58 | NC_001978.2 | + | 37553 | 0.69 | 0.340338 |
Target: 5'- --aGCUucauGCGCaACGggCCGACCACGUUg -3' miRNA: 3'- guaCGG----CGCG-UGCa-GGCUGGUGCAGu -5' |
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8086 | 3' | -58 | NC_001978.2 | + | 5656 | 0.69 | 0.323435 |
Target: 5'- gAUGCCGCGCGgcugaccCGUgCCGguACC-CGUCAg -3' miRNA: 3'- gUACGGCGCGU-------GCA-GGC--UGGuGCAGU- -5' |
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8086 | 3' | -58 | NC_001978.2 | + | 25223 | 0.68 | 0.365578 |
Target: 5'- aCAUGCCGUGCcgguugugacACGggCGACguCGUCAg -3' miRNA: 3'- -GUACGGCGCG----------UGCagGCUGguGCAGU- -5' |
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8086 | 3' | -58 | NC_001978.2 | + | 39300 | 0.68 | 0.365578 |
Target: 5'- --aGCCGgacgGCACG-CCGACCACGa-- -3' miRNA: 3'- guaCGGCg---CGUGCaGGCUGGUGCagu -5' |
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8086 | 3' | -58 | NC_001978.2 | + | 33873 | 0.68 | 0.392081 |
Target: 5'- cCGUGCgCGUGUACG-CCGACgACGa-- -3' miRNA: 3'- -GUACG-GCGCGUGCaGGCUGgUGCagu -5' |
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8086 | 3' | -58 | NC_001978.2 | + | 20404 | 0.67 | 0.458545 |
Target: 5'- --aGUCGCGC-CGgUCGGCCgACGUCGc -3' miRNA: 3'- guaCGGCGCGuGCaGGCUGG-UGCAGU- -5' |
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8086 | 3' | -58 | NC_001978.2 | + | 2046 | 0.67 | 0.419802 |
Target: 5'- aCGUGUgGCGCGCGUgUaACC-CGUCGu -3' miRNA: 3'- -GUACGgCGCGUGCAgGcUGGuGCAGU- -5' |
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8086 | 3' | -58 | NC_001978.2 | + | 8680 | 0.67 | 0.419802 |
Target: 5'- -uUGCgUGCGCACGUCUGGUCA-GUCAc -3' miRNA: 3'- guACG-GCGCGUGCAGGCUGGUgCAGU- -5' |
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8086 | 3' | -58 | NC_001978.2 | + | 9875 | 0.67 | 0.4095 |
Target: 5'- --cGCCGCGC-CGUC-GACCuugcccaGCGUCu -3' miRNA: 3'- guaCGGCGCGuGCAGgCUGG-------UGCAGu -5' |
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8086 | 3' | -58 | NC_001978.2 | + | 32986 | 0.67 | 0.41043 |
Target: 5'- cCGUGCCGCgaauggcaggggGCACGaCCGGCuCAgUGUCGg -3' miRNA: 3'- -GUACGGCG------------CGUGCaGGCUG-GU-GCAGU- -5' |
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8086 | 3' | -58 | NC_001978.2 | + | 32261 | 0.67 | 0.423588 |
Target: 5'- cCGUGCgccaucccucagcggUGCGCGCGUCCGucgauACC-CGUCc -3' miRNA: 3'- -GUACG---------------GCGCGUGCAGGC-----UGGuGCAGu -5' |
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8086 | 3' | -58 | NC_001978.2 | + | 26532 | 0.66 | 0.488817 |
Target: 5'- -uUGCC-CGUACGaggUCGACCACGcCGu -3' miRNA: 3'- guACGGcGCGUGCa--GGCUGGUGCaGU- -5' |
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8086 | 3' | -58 | NC_001978.2 | + | 10283 | 0.66 | 0.488817 |
Target: 5'- --cGCCGCGUugaGUCCGGCCugaACGcCc -3' miRNA: 3'- guaCGGCGCGug-CAGGCUGG---UGCaGu -5' |
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8086 | 3' | -58 | NC_001978.2 | + | 26676 | 0.66 | 0.509509 |
Target: 5'- --aGCCGaCGCAUGUagCCGACaAgGUCAg -3' miRNA: 3'- guaCGGC-GCGUGCA--GGCUGgUgCAGU- -5' |
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8086 | 3' | -58 | NC_001978.2 | + | 14575 | 0.66 | 0.509509 |
Target: 5'- gGUGaUUGUGCGCGUCCGGCguCGg-- -3' miRNA: 3'- gUAC-GGCGCGUGCAGGCUGguGCagu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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