miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8086 5' -56 NC_001978.2 + 28296 0.66 0.600113
Target:  5'- aAGUaGCgucGGCCGGAUGcucagGCGCGCGUg -3'
miRNA:   3'- -UCAcUGa--CUGGUCUGCa----CGCGUGCGu -5'
8086 5' -56 NC_001978.2 + 2622 0.66 0.577781
Target:  5'- cGGU-ACUGAaggaAGACGcccgggGCGCGCGCAu -3'
miRNA:   3'- -UCAcUGACUgg--UCUGCa-----CGCGUGCGU- -5'
8086 5' -56 NC_001978.2 + 29195 0.66 0.577781
Target:  5'- cGUGACgGACaCAGugacaagcccCGUGcCGCGCGCu -3'
miRNA:   3'- uCACUGaCUG-GUCu---------GCAC-GCGUGCGu -5'
8086 5' -56 NC_001978.2 + 15589 0.67 0.533744
Target:  5'- cAGUGGCUcGACUcccuuguuGGGCGggGCGCucACGCGu -3'
miRNA:   3'- -UCACUGA-CUGG--------UCUGCa-CGCG--UGCGU- -5'
8086 5' -56 NC_001978.2 + 23517 0.68 0.456895
Target:  5'- --cGGCUGACCGaucaucucuucgucGGCGUGCGaCACGa- -3'
miRNA:   3'- ucaCUGACUGGU--------------CUGCACGC-GUGCgu -5'
8086 5' -56 NC_001978.2 + 15404 0.69 0.410675
Target:  5'- --aGAauCUGACCGGcguCGUugGCGCGCGCAc -3'
miRNA:   3'- ucaCU--GACUGGUCu--GCA--CGCGUGCGU- -5'
8086 5' -56 NC_001978.2 + 36286 0.69 0.391907
Target:  5'- gGGUG-CUGACCGGGgG-GCGUugGUu -3'
miRNA:   3'- -UCACuGACUGGUCUgCaCGCGugCGu -5'
8086 5' -56 NC_001978.2 + 40904 0.69 0.382735
Target:  5'- cGUGGCgaaccaUGACCAGACGUGUucGCucaGCGu -3'
miRNA:   3'- uCACUG------ACUGGUCUGCACG--CGug-CGU- -5'
8086 5' -56 NC_001978.2 + 8712 0.7 0.347499
Target:  5'- gGGuUGACgUGGUCGGACGUGCGCG-GCAu -3'
miRNA:   3'- -UC-ACUG-ACUGGUCUGCACGCGUgCGU- -5'
8086 5' -56 NC_001978.2 + 2017 0.72 0.254108
Target:  5'- gGGUGAgacggucgaccaccUUGAcCCGGACGUGUGgCGCGCGu -3'
miRNA:   3'- -UCACU--------------GACU-GGUCUGCACGC-GUGCGU- -5'
8086 5' -56 NC_001978.2 + 22460 0.74 0.201268
Target:  5'- cGUGACUGACgAGACGUGgGCuuucaaGCc -3'
miRNA:   3'- uCACUGACUGgUCUGCACgCGug----CGu -5'
8086 5' -56 NC_001978.2 + 8747 1.09 0.00058
Target:  5'- aAGUGACUGACCAGACGUGCGCACGCAa -3'
miRNA:   3'- -UCACUGACUGGUCUGCACGCGUGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.