miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8087 3' -58.4 NC_001978.2 + 38171 0.66 0.490674
Target:  5'- gGCgcGGCUUCcccguGCCGGAGcaauCGCCCu -3'
miRNA:   3'- -CGaaUCGGAGu----CGGCCUCagc-GCGGG- -5'
8087 3' -58.4 NC_001978.2 + 36781 0.69 0.295167
Target:  5'- cGCcggAGCCUgAGCCGGAGcC-UGCCg -3'
miRNA:   3'- -CGaa-UCGGAgUCGGCCUCaGcGCGGg -5'
8087 3' -58.4 NC_001978.2 + 36710 0.71 0.247098
Target:  5'- gGCggAGCCUgAgcccgucacggaGCCGGAGaCGgCGCCCc -3'
miRNA:   3'- -CGaaUCGGAgU------------CGGCCUCaGC-GCGGG- -5'
8087 3' -58.4 NC_001978.2 + 36598 0.71 0.216872
Target:  5'- cGCUUGugauGCUUCucGCCGaAGUCGgGCCCg -3'
miRNA:   3'- -CGAAU----CGGAGu-CGGCcUCAGCgCGGG- -5'
8087 3' -58.4 NC_001978.2 + 35561 0.66 0.480464
Target:  5'- ----cGCCggaugUCgAGCCGGAGaCGgCGCCCc -3'
miRNA:   3'- cgaauCGG-----AG-UCGGCCUCaGC-GCGGG- -5'
8087 3' -58.4 NC_001978.2 + 34481 0.69 0.3026
Target:  5'- ----cGCUUCGGCCGuGAuucGcCGCGCCCc -3'
miRNA:   3'- cgaauCGGAGUCGGC-CU---CaGCGCGGG- -5'
8087 3' -58.4 NC_001978.2 + 34140 0.72 0.200297
Target:  5'- gGUgu-GCgUCcGCCGGAG-CGUGCCCa -3'
miRNA:   3'- -CGaauCGgAGuCGGCCUCaGCGCGGG- -5'
8087 3' -58.4 NC_001978.2 + 32274 0.73 0.155763
Target:  5'- cGCUcAGCCUCAGCCGuGcgccaucccucagcGGUgcgCGCGUCCg -3'
miRNA:   3'- -CGAaUCGGAGUCGGC-C--------------UCA---GCGCGGG- -5'
8087 3' -58.4 NC_001978.2 + 32181 0.66 0.490674
Target:  5'- aGCUgacgcGCCUgAGCCGGGGUCaucacggcacgGuCGgCCg -3'
miRNA:   3'- -CGAau---CGGAgUCGGCCUCAG-----------C-GCgGG- -5'
8087 3' -58.4 NC_001978.2 + 31612 0.72 0.211221
Target:  5'- ---gGGCCggacgggaAGCCGGAGUCaaGCGCCg -3'
miRNA:   3'- cgaaUCGGag------UCGGCCUCAG--CGCGGg -5'
8087 3' -58.4 NC_001978.2 + 30701 0.68 0.350209
Target:  5'- aGCgccGCaacgUCcGCCGGAGUCGUcucGCCCu -3'
miRNA:   3'- -CGaauCGg---AGuCGGCCUCAGCG---CGGG- -5'
8087 3' -58.4 NC_001978.2 + 30518 0.66 0.47036
Target:  5'- uGCUUAGCgugUCGGCaagGGAaccGUCGgCGUCCg -3'
miRNA:   3'- -CGAAUCGg--AGUCGg--CCU---CAGC-GCGGG- -5'
8087 3' -58.4 NC_001978.2 + 30425 0.66 0.460364
Target:  5'- ---cGGCUUCGGCgCGuuccuugcuGAGUCGCuuGCCCu -3'
miRNA:   3'- cgaaUCGGAGUCG-GC---------CUCAGCG--CGGG- -5'
8087 3' -58.4 NC_001978.2 + 28636 0.68 0.341916
Target:  5'- cGCUUcgcucgaaggacGGCUUCGGCCaacGGGUuaggcucaCGCGCCCc -3'
miRNA:   3'- -CGAA------------UCGGAGUCGGc--CUCA--------GCGCGGG- -5'
8087 3' -58.4 NC_001978.2 + 28294 0.66 0.460364
Target:  5'- --gUAGCgUCGGCCGGAugcucaggCGCGCg- -3'
miRNA:   3'- cgaAUCGgAGUCGGCCUca------GCGCGgg -5'
8087 3' -58.4 NC_001978.2 + 27161 0.69 0.333766
Target:  5'- uGCgaaUGGCCUgGGCgaccCGGAGUCGauuaGCaCCg -3'
miRNA:   3'- -CGa--AUCGGAgUCG----GCCUCAGCg---CG-GG- -5'
8087 3' -58.4 NC_001978.2 + 27144 0.67 0.412168
Target:  5'- aGCUUccGGUCaaGGUCGuAGUCGCGCUCu -3'
miRNA:   3'- -CGAA--UCGGagUCGGCcUCAGCGCGGG- -5'
8087 3' -58.4 NC_001978.2 + 27099 0.66 0.490674
Target:  5'- ---aAGCUUCGGgCGGAGUCG-GCg- -3'
miRNA:   3'- cgaaUCGGAGUCgGCCUCAGCgCGgg -5'
8087 3' -58.4 NC_001978.2 + 26315 0.74 0.148658
Target:  5'- cGCUUGugcucgccgguuGCCU--GCCGGAGUCGCGCg- -3'
miRNA:   3'- -CGAAU------------CGGAguCGGCCUCAGCGCGgg -5'
8087 3' -58.4 NC_001978.2 + 26189 0.66 0.490674
Target:  5'- cGCUugUGGCauggacugaCGGCCGGAucaaGUaCGCGUCCg -3'
miRNA:   3'- -CGA--AUCGga-------GUCGGCCU----CA-GCGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.