Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8087 | 5' | -58.9 | NC_001978.2 | + | 30308 | 0.66 | 0.435649 |
Target: 5'- -cGGcguuuuCGUCGgcCCCGGCguugccguugcgcucUUCCCGCa -3' miRNA: 3'- uuCCu-----GCAGCaaGGGCCG---------------AAGGGCGa -5' |
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8087 | 5' | -58.9 | NC_001978.2 | + | 2984 | 0.66 | 0.403497 |
Target: 5'- -uGGGCGcCGU--UCGGCUUCCgGCg -3' miRNA: 3'- uuCCUGCaGCAagGGCCGAAGGgCGa -5' |
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8087 | 5' | -58.9 | NC_001978.2 | + | 4810 | 0.67 | 0.385299 |
Target: 5'- -cGGACGgcgaCGUUgcCCCGGCUUCUCa-- -3' miRNA: 3'- uuCCUGCa---GCAA--GGGCCGAAGGGcga -5' |
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8087 | 5' | -58.9 | NC_001978.2 | + | 35632 | 0.69 | 0.295303 |
Target: 5'- cAGGGGCGcCGUcUCCGGCUcgacaUCCgGCg -3' miRNA: 3'- -UUCCUGCaGCAaGGGCCGA-----AGGgCGa -5' |
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8087 | 5' | -58.9 | NC_001978.2 | + | 36174 | 0.69 | 0.266889 |
Target: 5'- -uGGuCGUCGgcUUCGGCUUCCuCGCg -3' miRNA: 3'- uuCCuGCAGCaaGGGCCGAAGG-GCGa -5' |
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8087 | 5' | -58.9 | NC_001978.2 | + | 30299 | 0.71 | 0.21107 |
Target: 5'- cGAGGGCGaCGUguacgaagccgCCCGGCUcgcacagaucaUCCCGCc -3' miRNA: 3'- -UUCCUGCaGCAa----------GGGCCGA-----------AGGGCGa -5' |
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8087 | 5' | -58.9 | NC_001978.2 | + | 25512 | 0.74 | 0.132774 |
Target: 5'- --cGACGUCGUucgCCCGGU-UCCCGCg -3' miRNA: 3'- uucCUGCAGCAa--GGGCCGaAGGGCGa -5' |
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8087 | 5' | -58.9 | NC_001978.2 | + | 9118 | 1.04 | 0.000628 |
Target: 5'- cAAGGACGUCGUUCCCGGCUUCCCGCUc -3' miRNA: 3'- -UUCCUGCAGCAAGGGCCGAAGGGCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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