miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8087 5' -58.9 NC_001978.2 + 30308 0.66 0.435649
Target:  5'- -cGGcguuuuCGUCGgcCCCGGCguugccguugcgcucUUCCCGCa -3'
miRNA:   3'- uuCCu-----GCAGCaaGGGCCG---------------AAGGGCGa -5'
8087 5' -58.9 NC_001978.2 + 2984 0.66 0.403497
Target:  5'- -uGGGCGcCGU--UCGGCUUCCgGCg -3'
miRNA:   3'- uuCCUGCaGCAagGGCCGAAGGgCGa -5'
8087 5' -58.9 NC_001978.2 + 4810 0.67 0.385299
Target:  5'- -cGGACGgcgaCGUUgcCCCGGCUUCUCa-- -3'
miRNA:   3'- uuCCUGCa---GCAA--GGGCCGAAGGGcga -5'
8087 5' -58.9 NC_001978.2 + 35632 0.69 0.295303
Target:  5'- cAGGGGCGcCGUcUCCGGCUcgacaUCCgGCg -3'
miRNA:   3'- -UUCCUGCaGCAaGGGCCGA-----AGGgCGa -5'
8087 5' -58.9 NC_001978.2 + 36174 0.69 0.266889
Target:  5'- -uGGuCGUCGgcUUCGGCUUCCuCGCg -3'
miRNA:   3'- uuCCuGCAGCaaGGGCCGAAGG-GCGa -5'
8087 5' -58.9 NC_001978.2 + 30299 0.71 0.21107
Target:  5'- cGAGGGCGaCGUguacgaagccgCCCGGCUcgcacagaucaUCCCGCc -3'
miRNA:   3'- -UUCCUGCaGCAa----------GGGCCGA-----------AGGGCGa -5'
8087 5' -58.9 NC_001978.2 + 25512 0.74 0.132774
Target:  5'- --cGACGUCGUucgCCCGGU-UCCCGCg -3'
miRNA:   3'- uucCUGCAGCAa--GGGCCGaAGGGCGa -5'
8087 5' -58.9 NC_001978.2 + 9118 1.04 0.000628
Target:  5'- cAAGGACGUCGUUCCCGGCUUCCCGCUc -3'
miRNA:   3'- -UUCCUGCAGCAAGGGCCGAAGGGCGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.