Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8088 | 3' | -48.1 | NC_001978.2 | + | 14199 | 0.66 | 0.969408 |
Target: 5'- aCCGGCGGGUaa-CGgUCgaacUUCGCGa -3' miRNA: 3'- -GGUUGUCCAgaaGCgAGaau-AAGCGC- -5' |
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8088 | 3' | -48.1 | NC_001978.2 | + | 19499 | 0.66 | 0.962056 |
Target: 5'- aCCGcGCGGGUCacgguucaggCGCUCU---UCGCGc -3' miRNA: 3'- -GGU-UGUCCAGaa--------GCGAGAauaAGCGC- -5' |
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8088 | 3' | -48.1 | NC_001978.2 | + | 37291 | 0.66 | 0.957099 |
Target: 5'- cCCGAUgccuAGGUCUUCGCacaugg-CGCGu -3' miRNA: 3'- -GGUUG----UCCAGAAGCGagaauaaGCGC- -5' |
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8088 | 3' | -48.1 | NC_001978.2 | + | 39911 | 0.67 | 0.932936 |
Target: 5'- gCCAACGGGUCcgucguacgCGC-CUgccgCGCGg -3' miRNA: 3'- -GGUUGUCCAGaa-------GCGaGAauaaGCGC- -5' |
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8088 | 3' | -48.1 | NC_001978.2 | + | 12036 | 0.68 | 0.914194 |
Target: 5'- aCUGGCAGGUgaUCGCUacggcgCGCGg -3' miRNA: 3'- -GGUUGUCCAgaAGCGAgaauaaGCGC- -5' |
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8088 | 3' | -48.1 | NC_001978.2 | + | 423 | 0.7 | 0.822604 |
Target: 5'- aCAACAGGUCggCGCgacgg-UCGUGa -3' miRNA: 3'- gGUUGUCCAGaaGCGagaauaAGCGC- -5' |
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8088 | 3' | -48.1 | NC_001978.2 | + | 3435 | 0.71 | 0.771126 |
Target: 5'- cCCAACAGGaCUUCGUUCccg-UCgGCGu -3' miRNA: 3'- -GGUUGUCCaGAAGCGAGaauaAG-CGC- -5' |
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8088 | 3' | -48.1 | NC_001978.2 | + | 9461 | 1.11 | 0.003236 |
Target: 5'- uCCAACAGGUCUUCGCUCUUAUUCGCGc -3' miRNA: 3'- -GGUUGUCCAGAAGCGAGAAUAAGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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