miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8088 3' -48.1 NC_001978.2 + 14199 0.66 0.969408
Target:  5'- aCCGGCGGGUaa-CGgUCgaacUUCGCGa -3'
miRNA:   3'- -GGUUGUCCAgaaGCgAGaau-AAGCGC- -5'
8088 3' -48.1 NC_001978.2 + 19499 0.66 0.962056
Target:  5'- aCCGcGCGGGUCacgguucaggCGCUCU---UCGCGc -3'
miRNA:   3'- -GGU-UGUCCAGaa--------GCGAGAauaAGCGC- -5'
8088 3' -48.1 NC_001978.2 + 37291 0.66 0.957099
Target:  5'- cCCGAUgccuAGGUCUUCGCacaugg-CGCGu -3'
miRNA:   3'- -GGUUG----UCCAGAAGCGagaauaaGCGC- -5'
8088 3' -48.1 NC_001978.2 + 39911 0.67 0.932936
Target:  5'- gCCAACGGGUCcgucguacgCGC-CUgccgCGCGg -3'
miRNA:   3'- -GGUUGUCCAGaa-------GCGaGAauaaGCGC- -5'
8088 3' -48.1 NC_001978.2 + 12036 0.68 0.914194
Target:  5'- aCUGGCAGGUgaUCGCUacggcgCGCGg -3'
miRNA:   3'- -GGUUGUCCAgaAGCGAgaauaaGCGC- -5'
8088 3' -48.1 NC_001978.2 + 423 0.7 0.822604
Target:  5'- aCAACAGGUCggCGCgacgg-UCGUGa -3'
miRNA:   3'- gGUUGUCCAGaaGCGagaauaAGCGC- -5'
8088 3' -48.1 NC_001978.2 + 3435 0.71 0.771126
Target:  5'- cCCAACAGGaCUUCGUUCccg-UCgGCGu -3'
miRNA:   3'- -GGUUGUCCaGAAGCGAGaauaAG-CGC- -5'
8088 3' -48.1 NC_001978.2 + 9461 1.11 0.003236
Target:  5'- uCCAACAGGUCUUCGCUCUUAUUCGCGc -3'
miRNA:   3'- -GGUUGUCCAGAAGCGAGAAUAAGCGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.