miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8089 3' -58.6 NC_001978.2 + 9571 1 0.001633
Target:  5'- aCAAGGUCAGCGUCGC-AGCGCCACCCu -3'
miRNA:   3'- -GUUCCAGUCGCAGCGcUCGCGGUGGG- -5'
8089 3' -58.6 NC_001978.2 + 13896 0.79 0.059935
Target:  5'- aCAGGGUCAGCGUCGgaauggccaCGGGUGCgGCuCCg -3'
miRNA:   3'- -GUUCCAGUCGCAGC---------GCUCGCGgUG-GG- -5'
8089 3' -58.6 NC_001978.2 + 5188 0.78 0.069216
Target:  5'- --uGGUCGGCGgaaCGCuGAGCGCCggaGCCCg -3'
miRNA:   3'- guuCCAGUCGCa--GCG-CUCGCGG---UGGG- -5'
8089 3' -58.6 NC_001978.2 + 13283 0.78 0.075433
Target:  5'- gCAAGGUCGGcCGUCGUGguccacAGCaaGCCGCCCc -3'
miRNA:   3'- -GUUCCAGUC-GCAGCGC------UCG--CGGUGGG- -5'
8089 3' -58.6 NC_001978.2 + 40585 0.73 0.156415
Target:  5'- cUAAGGaaCGGCGU--CGAGCGCUACCCa -3'
miRNA:   3'- -GUUCCa-GUCGCAgcGCUCGCGGUGGG- -5'
8089 3' -58.6 NC_001978.2 + 1663 0.71 0.215841
Target:  5'- --cGG-CAGCGaugaucugUCGCuGAGCGUCGCCCc -3'
miRNA:   3'- guuCCaGUCGC--------AGCG-CUCGCGGUGGG- -5'
8089 3' -58.6 NC_001978.2 + 29453 0.71 0.221582
Target:  5'- -uAGGUCAGCGUCgGCGAcgacGgGCaCGCCg -3'
miRNA:   3'- guUCCAGUCGCAG-CGCU----CgCG-GUGGg -5'
8089 3' -58.6 NC_001978.2 + 36712 0.7 0.245225
Target:  5'- uCAGGGcuucccgcUCAGCGUCgGCaAGCGCCuucauguacacggGCCCg -3'
miRNA:   3'- -GUUCC--------AGUCGCAG-CGcUCGCGG-------------UGGG- -5'
8089 3' -58.6 NC_001978.2 + 5385 0.7 0.245858
Target:  5'- ---cGUCGGaCGUCGUGAaggucgacGCGCCACCg -3'
miRNA:   3'- guucCAGUC-GCAGCGCU--------CGCGGUGGg -5'
8089 3' -58.6 NC_001978.2 + 6491 0.7 0.252262
Target:  5'- -cAGG-CAGCGaCGuCGGGCGCCAauuuccCCCa -3'
miRNA:   3'- guUCCaGUCGCaGC-GCUCGCGGU------GGG- -5'
8089 3' -58.6 NC_001978.2 + 8187 0.7 0.272299
Target:  5'- uUAAGGUCacGGCGUcCGCGAaggGCGCCGUCa -3'
miRNA:   3'- -GUUCCAG--UCGCA-GCGCU---CGCGGUGGg -5'
8089 3' -58.6 NC_001978.2 + 36055 0.7 0.279256
Target:  5'- -cGGGUCGGCGgcaGUcuccgGGGUGUCGCCCc -3'
miRNA:   3'- guUCCAGUCGCag-CG-----CUCGCGGUGGG- -5'
8089 3' -58.6 NC_001978.2 + 18678 0.7 0.279256
Target:  5'- -cGGGUCAGCGaaUGCGAcGCGCUgauAUCCg -3'
miRNA:   3'- guUCCAGUCGCa-GCGCU-CGCGG---UGGG- -5'
8089 3' -58.6 NC_001978.2 + 34103 0.69 0.286354
Target:  5'- -uGGGaacGCGUacaguccgCGCGAGuCGCCACCCa -3'
miRNA:   3'- guUCCaguCGCA--------GCGCUC-GCGGUGGG- -5'
8089 3' -58.6 NC_001978.2 + 22105 0.69 0.292863
Target:  5'- -cAGGUCGGCGcgaaccuUCGUGuaccGGCgaGCCGCCCc -3'
miRNA:   3'- guUCCAGUCGC-------AGCGC----UCG--CGGUGGG- -5'
8089 3' -58.6 NC_001978.2 + 6866 0.69 0.293594
Target:  5'- aCAAGGUCGGCGUUcacgGC-AGCGCaagcgGCCUu -3'
miRNA:   3'- -GUUCCAGUCGCAG----CGcUCGCGg----UGGG- -5'
8089 3' -58.6 NC_001978.2 + 16923 0.69 0.323975
Target:  5'- -cAGG-CAGCGUC-CGAcGUGCUugCCa -3'
miRNA:   3'- guUCCaGUCGCAGcGCU-CGCGGugGG- -5'
8089 3' -58.6 NC_001978.2 + 8220 0.68 0.331927
Target:  5'- uCAAGGcaggcUCAGCGgcUCGCGuGCcguauGCCGCCg -3'
miRNA:   3'- -GUUCC-----AGUCGC--AGCGCuCG-----CGGUGGg -5'
8089 3' -58.6 NC_001978.2 + 8963 0.68 0.338392
Target:  5'- --uGGUCGGCGUCGCccauaaucgugaucuGAaugggucgagccacaGCGCC-CCCu -3'
miRNA:   3'- guuCCAGUCGCAGCG---------------CU---------------CGCGGuGGG- -5'
8089 3' -58.6 NC_001978.2 + 34350 0.68 0.356637
Target:  5'- gCAGGGuUCGcGCGUCGUGuacAGCGUgGCuCCg -3'
miRNA:   3'- -GUUCC-AGU-CGCAGCGC---UCGCGgUG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.