Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8089 | 3' | -58.6 | NC_001978.2 | + | 40585 | 0.73 | 0.156415 |
Target: 5'- cUAAGGaaCGGCGU--CGAGCGCUACCCa -3' miRNA: 3'- -GUUCCa-GUCGCAgcGCUCGCGGUGGG- -5' |
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8089 | 3' | -58.6 | NC_001978.2 | + | 34168 | 0.66 | 0.487853 |
Target: 5'- -uGGGcaacUgAGCGcCGuCGAGUGCgCGCCCa -3' miRNA: 3'- guUCC----AgUCGCaGC-GCUCGCG-GUGGG- -5' |
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8089 | 3' | -58.6 | NC_001978.2 | + | 15932 | 0.66 | 0.477701 |
Target: 5'- aCAAGGgcgacacgGGCG-CGaCGGGCGCCgACUCg -3' miRNA: 3'- -GUUCCag------UCGCaGC-GCUCGCGG-UGGG- -5' |
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8089 | 3' | -58.6 | NC_001978.2 | + | 34138 | 0.67 | 0.428603 |
Target: 5'- -cGGGUguGCGUcCGCcgGAGCG-UGCCCa -3' miRNA: 3'- guUCCAguCGCA-GCG--CUCGCgGUGGG- -5' |
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8089 | 3' | -58.6 | NC_001978.2 | + | 22735 | 0.67 | 0.428603 |
Target: 5'- ---cGUCGGCGUCGUGuuCGUCGCUg -3' miRNA: 3'- guucCAGUCGCAGCGCucGCGGUGGg -5' |
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8089 | 3' | -58.6 | NC_001978.2 | + | 27431 | 0.67 | 0.409813 |
Target: 5'- ---uGUCGGCGugaaguUCGCuGAcGCGCCugCCg -3' miRNA: 3'- guucCAGUCGC------AGCG-CU-CGCGGugGG- -5' |
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8089 | 3' | -58.6 | NC_001978.2 | + | 11691 | 0.67 | 0.409813 |
Target: 5'- --cGG-CAGCGUUGCG-GC-UCGCCCu -3' miRNA: 3'- guuCCaGUCGCAGCGCuCGcGGUGGG- -5' |
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8089 | 3' | -58.6 | NC_001978.2 | + | 10887 | 0.67 | 0.400613 |
Target: 5'- -cGGGUgGacccGUGUUgGCGAGCGUgGCCCg -3' miRNA: 3'- guUCCAgU----CGCAG-CGCUCGCGgUGGG- -5' |
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8089 | 3' | -58.6 | NC_001978.2 | + | 21982 | 0.67 | 0.391544 |
Target: 5'- aCAuGG-CAGCG-CGCGAccgcgaagGCGCCAUUCa -3' miRNA: 3'- -GUuCCaGUCGCaGCGCU--------CGCGGUGGG- -5' |
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8089 | 3' | -58.6 | NC_001978.2 | + | 8187 | 0.7 | 0.272299 |
Target: 5'- uUAAGGUCacGGCGUcCGCGAaggGCGCCGUCa -3' miRNA: 3'- -GUUCCAG--UCGCA-GCGCU---CGCGGUGGg -5' |
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8089 | 3' | -58.6 | NC_001978.2 | + | 16923 | 0.69 | 0.323975 |
Target: 5'- -cAGG-CAGCGUC-CGAcGUGCUugCCa -3' miRNA: 3'- guUCCaGUCGCAGcGCU-CGCGGugGG- -5' |
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8089 | 3' | -58.6 | NC_001978.2 | + | 8220 | 0.68 | 0.331927 |
Target: 5'- uCAAGGcaggcUCAGCGgcUCGCGuGCcguauGCCGCCg -3' miRNA: 3'- -GUUCC-----AGUCGC--AGCGCuCG-----CGGUGGg -5' |
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8089 | 3' | -58.6 | NC_001978.2 | + | 23467 | 0.68 | 0.356637 |
Target: 5'- --cGGUCAGCcgUGCGGGUGCCcgaaGCUCu -3' miRNA: 3'- guuCCAGUCGcaGCGCUCGCGG----UGGG- -5' |
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8089 | 3' | -58.6 | NC_001978.2 | + | 19643 | 0.68 | 0.365156 |
Target: 5'- aCAAGGUCAGCGaccCGCGcaaGGaCGCCuucgacaagGCUCg -3' miRNA: 3'- -GUUCCAGUCGCa--GCGC---UC-GCGG---------UGGG- -5' |
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8089 | 3' | -58.6 | NC_001978.2 | + | 41224 | 0.67 | 0.391544 |
Target: 5'- gUAAGG-CAGUGggCGCGcacuGUGCUACCUg -3' miRNA: 3'- -GUUCCaGUCGCa-GCGCu---CGCGGUGGG- -5' |
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8089 | 3' | -58.6 | NC_001978.2 | + | 9571 | 1 | 0.001633 |
Target: 5'- aCAAGGUCAGCGUCGC-AGCGCCACCCu -3' miRNA: 3'- -GUUCCAGUCGCAGCGcUCGCGGUGGG- -5' |
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8089 | 3' | -58.6 | NC_001978.2 | + | 19769 | 0.66 | 0.487853 |
Target: 5'- ---cGUUGGCGUaGuCGAGCGCUucgGCCCa -3' miRNA: 3'- guucCAGUCGCAgC-GCUCGCGG---UGGG- -5' |
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8089 | 3' | -58.6 | NC_001978.2 | + | 26191 | 0.66 | 0.487853 |
Target: 5'- aCAAGGUCGcccaggauGCG-CGC-AGCGUCggcGCCCu -3' miRNA: 3'- -GUUCCAGU--------CGCaGCGcUCGCGG---UGGG- -5' |
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8089 | 3' | -58.6 | NC_001978.2 | + | 910 | 0.66 | 0.477701 |
Target: 5'- aAGGGUCAGCG-CGUcAGCGacgaaUACCa -3' miRNA: 3'- gUUCCAGUCGCaGCGcUCGCg----GUGGg -5' |
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8089 | 3' | -58.6 | NC_001978.2 | + | 4688 | 0.66 | 0.477701 |
Target: 5'- uCAGGGUCGuCGUCGUccGCccgucGCUGCCCa -3' miRNA: 3'- -GUUCCAGUcGCAGCGcuCG-----CGGUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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