miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8089 3' -58.6 NC_001978.2 + 40585 0.73 0.156415
Target:  5'- cUAAGGaaCGGCGU--CGAGCGCUACCCa -3'
miRNA:   3'- -GUUCCa-GUCGCAgcGCUCGCGGUGGG- -5'
8089 3' -58.6 NC_001978.2 + 34168 0.66 0.487853
Target:  5'- -uGGGcaacUgAGCGcCGuCGAGUGCgCGCCCa -3'
miRNA:   3'- guUCC----AgUCGCaGC-GCUCGCG-GUGGG- -5'
8089 3' -58.6 NC_001978.2 + 15932 0.66 0.477701
Target:  5'- aCAAGGgcgacacgGGCG-CGaCGGGCGCCgACUCg -3'
miRNA:   3'- -GUUCCag------UCGCaGC-GCUCGCGG-UGGG- -5'
8089 3' -58.6 NC_001978.2 + 34138 0.67 0.428603
Target:  5'- -cGGGUguGCGUcCGCcgGAGCG-UGCCCa -3'
miRNA:   3'- guUCCAguCGCA-GCG--CUCGCgGUGGG- -5'
8089 3' -58.6 NC_001978.2 + 22735 0.67 0.428603
Target:  5'- ---cGUCGGCGUCGUGuuCGUCGCUg -3'
miRNA:   3'- guucCAGUCGCAGCGCucGCGGUGGg -5'
8089 3' -58.6 NC_001978.2 + 27431 0.67 0.409813
Target:  5'- ---uGUCGGCGugaaguUCGCuGAcGCGCCugCCg -3'
miRNA:   3'- guucCAGUCGC------AGCG-CU-CGCGGugGG- -5'
8089 3' -58.6 NC_001978.2 + 11691 0.67 0.409813
Target:  5'- --cGG-CAGCGUUGCG-GC-UCGCCCu -3'
miRNA:   3'- guuCCaGUCGCAGCGCuCGcGGUGGG- -5'
8089 3' -58.6 NC_001978.2 + 10887 0.67 0.400613
Target:  5'- -cGGGUgGacccGUGUUgGCGAGCGUgGCCCg -3'
miRNA:   3'- guUCCAgU----CGCAG-CGCUCGCGgUGGG- -5'
8089 3' -58.6 NC_001978.2 + 21982 0.67 0.391544
Target:  5'- aCAuGG-CAGCG-CGCGAccgcgaagGCGCCAUUCa -3'
miRNA:   3'- -GUuCCaGUCGCaGCGCU--------CGCGGUGGG- -5'
8089 3' -58.6 NC_001978.2 + 8187 0.7 0.272299
Target:  5'- uUAAGGUCacGGCGUcCGCGAaggGCGCCGUCa -3'
miRNA:   3'- -GUUCCAG--UCGCA-GCGCU---CGCGGUGGg -5'
8089 3' -58.6 NC_001978.2 + 16923 0.69 0.323975
Target:  5'- -cAGG-CAGCGUC-CGAcGUGCUugCCa -3'
miRNA:   3'- guUCCaGUCGCAGcGCU-CGCGGugGG- -5'
8089 3' -58.6 NC_001978.2 + 8220 0.68 0.331927
Target:  5'- uCAAGGcaggcUCAGCGgcUCGCGuGCcguauGCCGCCg -3'
miRNA:   3'- -GUUCC-----AGUCGC--AGCGCuCG-----CGGUGGg -5'
8089 3' -58.6 NC_001978.2 + 23467 0.68 0.356637
Target:  5'- --cGGUCAGCcgUGCGGGUGCCcgaaGCUCu -3'
miRNA:   3'- guuCCAGUCGcaGCGCUCGCGG----UGGG- -5'
8089 3' -58.6 NC_001978.2 + 19643 0.68 0.365156
Target:  5'- aCAAGGUCAGCGaccCGCGcaaGGaCGCCuucgacaagGCUCg -3'
miRNA:   3'- -GUUCCAGUCGCa--GCGC---UC-GCGG---------UGGG- -5'
8089 3' -58.6 NC_001978.2 + 41224 0.67 0.391544
Target:  5'- gUAAGG-CAGUGggCGCGcacuGUGCUACCUg -3'
miRNA:   3'- -GUUCCaGUCGCa-GCGCu---CGCGGUGGG- -5'
8089 3' -58.6 NC_001978.2 + 9571 1 0.001633
Target:  5'- aCAAGGUCAGCGUCGC-AGCGCCACCCu -3'
miRNA:   3'- -GUUCCAGUCGCAGCGcUCGCGGUGGG- -5'
8089 3' -58.6 NC_001978.2 + 19769 0.66 0.487853
Target:  5'- ---cGUUGGCGUaGuCGAGCGCUucgGCCCa -3'
miRNA:   3'- guucCAGUCGCAgC-GCUCGCGG---UGGG- -5'
8089 3' -58.6 NC_001978.2 + 26191 0.66 0.487853
Target:  5'- aCAAGGUCGcccaggauGCG-CGC-AGCGUCggcGCCCu -3'
miRNA:   3'- -GUUCCAGU--------CGCaGCGcUCGCGG---UGGG- -5'
8089 3' -58.6 NC_001978.2 + 910 0.66 0.477701
Target:  5'- aAGGGUCAGCG-CGUcAGCGacgaaUACCa -3'
miRNA:   3'- gUUCCAGUCGCaGCGcUCGCg----GUGGg -5'
8089 3' -58.6 NC_001978.2 + 4688 0.66 0.477701
Target:  5'- uCAGGGUCGuCGUCGUccGCccgucGCUGCCCa -3'
miRNA:   3'- -GUUCCAGUcGCAGCGcuCG-----CGGUGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.